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Wdr3 WD repeat domain 3 [ Dipodomys ordii (Ord's kangaroo rat) ]

Gene ID: 105991929, updated on 13-Mar-2024

Summary

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Gene symbol
Wdr3
Gene description
WD repeat domain 3
See related
Ensembl:ENSDORG00000011031
Gene type
protein coding
RefSeq status
MODEL
Organism
Dipodomys ordii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Heteromyidae; Dipodomyinae; Dipodomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
100 current Dord_2.0 (GCF_000151885.1) Unplaced Scaffold NW_012267294.1 (7094731..7123775)

NW_012267294.1Genomic Context describing neighboring genes Neighboring gene terminal nucleotidyltransferase 5C Neighboring gene ganglioside induced differentiation associated protein 2 Neighboring gene sperm associated antigen 17 Neighboring gene 60S ribosomal protein L39 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012267294.1 Unplaced Scaffold Reference Dord_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Pwp2p-containing subcomplex of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dipodomys ordii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dord_2.0

Genomic

  1. NW_012267294.1 Reference Dord_2.0

    Range
    7094731..7123775
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013024684.1 → XP_012880138.1  WD repeat-containing protein 3 isoform X1

    See identical proteins and their annotated locations for XP_012880138.1

    UniProtKB/TrEMBL
    A0A1S3FUA0
    Conserved Domains (6) summary
    COG2319
    Location:232 → 720
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:422 → 712
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam04003
    Location:813 → 914
    Utp12; Dip2/Utp12 Family
    sd00039
    Location:471 → 503
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:47 → 221
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl12057
    Location:758 → 816
    Seryl_tRNA_N; Seryl-tRNA synthetase N-terminal domain

  2. XM_013024687.1 → XP_012880141.1  WD repeat-containing protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A1S3FUA4
    Related
    ENSDORP00000016661.1, ENSDORT00000032588.1
    Conserved Domains (6) summary
    COG2319
    Location:231 → 719
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:421 → 711
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam04003
    Location:812 → 913
    Utp12; Dip2/Utp12 Family
    sd00039
    Location:470 → 502
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:47 → 226
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl12057
    Location:757 → 815
    Seryl_tRNA_N; Seryl-tRNA synthetase N-terminal domain

  3. XM_013024686.1 → XP_012880140.1  WD repeat-containing protein 3 isoform X1

    See identical proteins and their annotated locations for XP_012880140.1

    UniProtKB/TrEMBL
    A0A1S3FUA0
    Conserved Domains (6) summary
    COG2319
    Location:232 → 720
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:422 → 712
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam04003
    Location:813 → 914
    Utp12; Dip2/Utp12 Family
    sd00039
    Location:471 → 503
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:47 → 221
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl12057
    Location:758 → 816
    Seryl_tRNA_N; Seryl-tRNA synthetase N-terminal domain
Nucleotide Protein
Heading Accession and Version

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