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patl2 PAT1 homolog 2 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105916085, updated on 13-Mar-2024

Summary

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Gene symbol
patl2
Gene description
PAT1 homolog 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
Also known as
PAT1
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 10
Exon count:
19
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 10 NC_046370.1 (2008088..2022142, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012224565.1 (186879..198396, complement)

Chromosome 10 - NC_046370.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118564413 Neighboring gene spidroin-1-like Neighboring gene transforming growth factor beta-1-induced transcript 1 protein Neighboring gene elongin-B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in P-body assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in deadenylation-dependent decapping of nuclear-transcribed mRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein PAT1 homolog 2
Names
Associated with topoisomerase II-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046370.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    2008088..2022142 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036141777.1 → XP_035997670.1  protein PAT1 homolog 2 isoform X2

    Conserved Domains (1) summary
    pfam09770
    Location:240 → 572
    PAT1; Topoisomerase II-associated protein PAT1

  2. XM_036141776.1 → XP_035997669.1  protein PAT1 homolog 2 isoform X1

    Conserved Domains (1) summary
    pfam09770
    Location:241 → 573
    PAT1; Topoisomerase II-associated protein PAT1
Nucleotide Protein
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