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Csdc2 cold shock domain containing C2, RNA binding [ Mus musculus (house mouse) ]

Gene ID: 105859, updated on 7-Aug-2018

Summary

Official Symbol
Csdc2provided by MGI
Official Full Name
cold shock domain containing C2, RNA bindingprovided by MGI
Primary source
MGI:MGI:2146027
See related
Ensembl:ENSMUSG00000042109 Vega:OTTMUSG00000028156
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Pippin; AI415250; AI481750
Expression
Broad expression in cerebellum adult (RPKM 66.3), frontal lobe adult (RPKM 63.2) and 15 other tissues See more
Orthologs

Genomic context

See Csdc2 in Genome Data Viewer
Location:
15; 15 E1
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 15 NC_000081.6 (81936759..81950941)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (81767189..81781371)

Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene aconitase 2, mitochondrial Neighboring gene polymerase (RNA) III (DNA directed) polypeptide H Neighboring gene predicted gene, 32167 Neighboring gene phosphomannomutase 1 Neighboring gene cytochrome P450, family 2, subfamily d, polypeptide 67, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
RNA binding ISO
Inferred from Sequence Orthology
more info
 
mRNA 3'-UTR binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
transcription factor binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
mRNA processing IEA
Inferred from Electronic Annotation
more info
 
regulation of mRNA stability IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
cold shock domain-containing protein C2
Names
RNA-binding protein PIPPin

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145473.3NP_663448.2  cold shock domain-containing protein C2

    See identical proteins and their annotated locations for NP_663448.2

    Status: VALIDATED

    Source sequence(s)
    AC102103, AK028916, AK132493, BB871178, CO041050
    Consensus CDS
    CCDS27677.1
    UniProtKB/Swiss-Prot
    Q91YQ3
    Related
    ENSMUSP00000044441.7, OTTMUSP00000035469, ENSMUST00000038757.7, OTTMUST00000069746
    Conserved Domains (1) summary
    cd04458
    Location:71135
    CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000081.6 Reference GRCm38.p4 C57BL/6J

    Range
    81936759..81950941
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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