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CSDC2 cold shock domain containing C2 [ Homo sapiens (human) ]

Gene ID: 27254, updated on 18-Aug-2020

Summary

Official Symbol
CSDC2provided by HGNC
Official Full Name
cold shock domain containing C2provided by HGNC
Primary source
HGNC:HGNC:30359
See related
Ensembl:ENSG00000172346 MIM:617689
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PIPPIN; dJ347H13.2
Expression
Biased expression in ovary (RPKM 40.0), heart (RPKM 28.6) and 8 other tissues See more
Orthologs

Genomic context

See CSDC2 in Genome Data Viewer
Location:
22q13.2
Exon count:
4
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 22 NC_000022.11 (41561010..41576666)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (41957014..41972670)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene aconitase 2 Neighboring gene RNA polymerase III subunit H Neighboring gene uncharacterized LOC105373044 Neighboring gene phosphomannomutase 1 Neighboring gene desumoylating isopeptidase 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
RNA binding NAS
Non-traceable Author Statement
more info
PubMed 
mRNA 3'-UTR binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
transcription factor binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
mRNA processing IEA
Inferred from Electronic Annotation
more info
 
regulation of mRNA stability IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
cold shock domain-containing protein C2
Names
RNA-binding protein pippin
cold shock domain containing C2, RNA binding

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_014460.4NP_055275.1  cold shock domain-containing protein C2

    See identical proteins and their annotated locations for NP_055275.1

    Status: VALIDATED

    Source sequence(s)
    AL023553, AL834417, DB168570
    Consensus CDS
    CCDS14019.1
    UniProtKB/Swiss-Prot
    Q9Y534
    Related
    ENSP00000302485.7, ENST00000306149.12
    Conserved Domains (1) summary
    cd04458
    Location:70134
    CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p13 Primary Assembly

    Range
    41561010..41576666
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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