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LSM7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [ Propithecus coquereli (Coquerel's sifaka) ]

Gene ID: 105811253, updated on 13-Mar-2024

Summary

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Gene symbol
LSM7
Gene description
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
See related
Ensembl:ENSPCOG00000017177
Gene type
protein coding
RefSeq status
MODEL
Organism
Propithecus coquereli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Propithecus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Pcoq_1.0 (GCF_000956105.1) Unplaced Scaffold NW_012147864.1 (4406939..4412273, complement)

NW_012147864.1Genomic Context describing neighboring genes Neighboring gene PEAK family member 3 Neighboring gene leucine rich repeat and Ig domain containing 3 Neighboring gene signal peptide peptidase like 2B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012147864.1 Unplaced Scaffold Reference Pcoq_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Lsm1-7-Pat1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U6 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U6 snRNA-associated Sm-like protein LSm7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Propithecus coquereli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pcoq_1.0 Primary Assembly

Genomic

  1. NW_012147864.1 Reference Pcoq_1.0 Primary Assembly

    Range
    4406939..4412273 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012645392.1 → XP_012500846.1  U6 snRNA-associated Sm-like protein LSm7

    See identical proteins and their annotated locations for XP_012500846.1

    UniProtKB/TrEMBL
    A0A2K6FBG3, A0A2K6FBH1
    Related
    ENSPCOP00000011325.1, ENSPCOT00000021913.1
    Conserved Domains (1) summary
    cd01729
    Location:9 → 97
    LSm7; Like-Sm protein 7
Nucleotide Protein
Heading Accession and Version

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