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LOC105786094 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic [ Gossypium raimondii (Peruvian cotton) ]

Gene ID: 105786094, updated on 23-Nov-2023

Summary

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Gene symbol
LOC105786094
Gene description
DExH-box ATP-dependent RNA helicase DExH7, chloroplastic
Locus tag
B456_002G216000
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium raimondii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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Location:
chromosome: 1
Exon count:
35
Annotation release Status Assembly Chr Location
101 current ASM2569854v1 (GCF_025698545.1) 1 NC_068565.1 (46137955..46155490)
100 previous assembly Graimondii2_0 (GCF_000327365.1) 2 NC_026930.1 (56556126..56573670)

Chromosome 1 - NC_068565.1Genomic Context describing neighboring genes Neighboring gene nifU-like protein 2, chloroplastic Neighboring gene WEB family protein At3g51220 Neighboring gene uncharacterized protein At5g49945 Neighboring gene uncharacterized LOC105786095 Neighboring gene transfer RNA lysine (anticodon UUU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DExH-box ATP-dependent RNA helicase DExH7, chloroplastic
Names
ATP-dependent RNA helicase DHX36

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2569854v1 Primary Assembly

Genomic

  1. NC_068565.1 Reference ASM2569854v1 Primary Assembly

    Range
    46137955..46155490
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012612370.2 → XP_012467824.1  DExH-box ATP-dependent RNA helicase DExH7, chloroplastic

    See identical proteins and their annotated locations for XP_012467824.1

    UniProtKB/TrEMBL
    A0A0D2QA58, A0A0D2RAF0
    Conserved Domains (6) summary
    smart00847
    Location:1118 → 1214
    HA2; Helicase associated domain (HA2) Add an annotation
    COG1643
    Location:598 → 1444
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cd00046
    Location:645 → 795
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00271
    Location:917 → 1048
    Helicase_C; Helicase conserved C-terminal domain
    pfam07717
    Location:1254 → 1399
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
    cl00054
    Location:423 → 470
    DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
Nucleotide Protein
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