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ptch2 patched 2 [ Esox lucius (northern pike) ]

Gene ID: 105022690, updated on 18-Jun-2024

Summary

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Gene symbol
ptch2
Gene description
patched 2
See related
Ensembl:ENSELUG00000011819
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 3
Exon count:
20
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 3 NC_047571.1 (11148166..11178398)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG03 NC_025970.4 (25684380..25714393, complement)

Chromosome 3 - NC_047571.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117593508 Neighboring gene eukaryotic translation initiation factor 2B, subunit 3 gamma Neighboring gene kinesin family member 2C Neighboring gene uncharacterized LOC109615078

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. Rondeau EB, et al. PLoS One, 2014. PMID 25069045, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hedgehog family protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hedgehog receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables smoothened binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in smoothened signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein patched homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047571.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    11148166..11178398
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010891341.3 → XP_010889643.2  protein patched homolog 1

    UniProtKB/TrEMBL
    A0A3P8Y5Y3
    Related
    ENSELUP00000095641.1, ENSELUT00000093513.1
    Conserved Domains (1) summary
    cl25655
    Location:61 → 1219
    Patched; Patched family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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