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zcrb1 zinc finger CCHC-type and RNA binding motif 1 [ Esox lucius (northern pike) ]

Gene ID: 105020435, updated on 13-Mar-2024

Summary

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Gene symbol
zcrb1
Gene description
zinc finger CCHC-type and RNA binding motif 1
See related
EnsemblRapid:ENSELUG00000020877
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 23
Exon count:
7
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 23 NC_047591.1 (19204405..19212026)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG23 NC_025990.4 (6176248..6184427, complement)

Chromosome 23 - NC_047591.1Genomic Context describing neighboring genes Neighboring gene pseudouridine synthase 7 like Neighboring gene prickle homolog 1b Neighboring gene periphilin 1 Neighboring gene YY1 associated factor 2 Neighboring gene uncharacterized LOC117593800

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger CCHC-type and RNA-binding motif-containing protein 1
Names
zinc finger CCHC-type and RNA binding motif containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047591.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    19204405..19212026
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034290105.1 → XP_034145996.1  zinc finger CCHC-type and RNA-binding motif-containing protein 1

    UniProtKB/TrEMBL
    A0A3P8YZ56, A0A6Q2X711
    Related
    ENSELUP00000091259.1, ENSELUT00000095527.1
    Conserved Domains (2) summary
    PTZ00368
    Location:97 → 123
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
    cd12393
    Location:9 → 84
    RRM_ZCRB1; RNA recognition motif (RRM) found in Zinc finger CCHC-type and RNA-binding motif-containing protein 1 (ZCRB1) and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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