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Aqr aquarius intron-binding spliceosomal factor [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104862576, updated on 12-Mar-2024

Summary

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Gene symbol
Aqr
Gene description
aquarius intron-binding spliceosomal factor
Locus tag
H920_05524
See related
Ensembl:ENSFDAG00000000252
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
35
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900929.1 (40831484..40922009)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011044718.1 (2022568..2113093, complement)

NW_022900929.1Genomic Context describing neighboring genes Neighboring gene ubiquitin carboxyl-terminal hydrolase 12-like Neighboring gene zinc finger protein 770 Neighboring gene elongation of very long chain fatty acids protein 7-like Neighboring gene U4 spliceosomal RNA Neighboring gene actin alpha cardiac muscle 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA helicase aquarius
Names
Intron-binding protein aquarius

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900929.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    40831484..40922009
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010624625.2 → XP_010622927.1  RNA helicase aquarius

    See identical proteins and their annotated locations for XP_010622927.1

    UniProtKB/TrEMBL
    A0A091DR01
    Related
    ENSFDAP00000013495.1, ENSFDAT00000026413.1
    Conserved Domains (4) summary
    pfam13086
    Location:805 → 1107
    AAA_11; AAA domain
    pfam13245
    Location:808 → 880
    AAA_19; Part of AAA domain
    pfam16399
    Location:18 → 802
    Aquarius_N; Intron-binding protein aquarius N-terminus
    cl22977
    Location:1115 → 1304
    UvrD_C_2; UvrD-like helicase C-terminal domain
Nucleotide Protein
Heading Accession and Version

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