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LOC104803280 regulatory protein NPR5-like [ Tarenaya hassleriana ]

Gene ID: 104803280, updated on 21-Dec-2023

Summary

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Gene symbol
LOC104803280
Gene description
regulatory protein NPR5-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Tarenaya hassleriana
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; New World clade; Tarenaya
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Genomic context

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See LOC104803280 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ASM46358v1 (GCF_000463585.1) Unplaced Scaffold NW_010970652.1 (505151..507710)

NW_010970652.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104803279 Neighboring gene uncharacterized LOC104803278 Neighboring gene probable calcium-binding protein CML35 Neighboring gene triacylglycerol lipase SDP1L

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010970652.1 Unplaced Scaffold Reference ASM46358v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in plant organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
regulatory protein NPR5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tarenaya hassleriana Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM46358v1

Genomic

  1. NW_010970652.1 Reference ASM46358v1

    Range
    505151..507710
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010527194.1 → XP_010525496.1  regulatory protein NPR5-like isoform X1

    Conserved Domains (6) summary
    pfam11900
    Location:200 → 263
    DUF3420; Domain of unknown function (DUF3420)
    smart00225
    Location:27 → 163
    BTB; Broad-Complex, Tramtrack and Bric a brac
    cd00204
    Location:265 → 361
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam00651
    Location:16 → 117
    BTB; BTB/POZ domain
    pfam12796
    Location:265 → 351
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:290 → 318
    ANK; ANK repeat [structural motif]

  2. XM_010527195.1 → XP_010525497.1  regulatory protein NPR5-like isoform X2

    Conserved Domains (6) summary
    pfam11900
    Location:200 → 263
    DUF3420; Domain of unknown function (DUF3420)
    smart00225
    Location:27 → 163
    BTB; Broad-Complex, Tramtrack and Bric a brac
    cd00204
    Location:265 → 361
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam00651
    Location:16 → 117
    BTB; BTB/POZ domain
    pfam12796
    Location:265 → 351
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:290 → 318
    ANK; ANK repeat [structural motif]
Nucleotide Protein
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