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LOC104801185 syntaxin-123 [ Tarenaya hassleriana ]

Gene ID: 104801185, updated on 21-Dec-2023

Summary

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Gene symbol
LOC104801185
Gene description
syntaxin-123
Gene type
protein coding
RefSeq status
MODEL
Organism
Tarenaya hassleriana
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; New World clade; Tarenaya
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Genomic context

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See LOC104801185 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current ASM46358v1 (GCF_000463585.1) Unplaced Scaffold NW_010969548.1 (3670438..3671508, complement)

NW_010969548.1Genomic Context describing neighboring genes Neighboring gene protein SYM1 Neighboring gene secretory carrier-associated membrane protein 2-like Neighboring gene transfer RNA glutamine (anticodon CUG) Neighboring gene protein TIC 20-IV, chloroplastic Neighboring gene transfer RNA aspartic acid (anticodon GUC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010969548.1 Unplaced Scaffold Reference ASM46358v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntaxin-123

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tarenaya hassleriana Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM46358v1

Genomic

  1. NW_010969548.1 Reference ASM46358v1

    Range
    3670438..3671508 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010524335.1 → XP_010522637.1  syntaxin-123

    Conserved Domains (3) summary
    cd00179
    Location:34 → 191
    SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
    cd15848
    Location:203 → 264
    SNARE_syntaxin1-like; SNARE motif of syntaxin 1 and related proteins
    pfam00804
    Location:34 → 239
    Syntaxin; Syntaxin
Nucleotide Protein
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