1SFC,2XHE


Conserved Protein Domain Family
SNARE_syntaxin1-like

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cd15848: SNARE_syntaxin1-like 
Click on image for an interactive view with Cn3D
SNARE motif of syntaxin 1 and related proteins
SNARE (soluble N-ethylmaleimide-sensitive factor attachment protein receptor) proteins consist of coiled-coil helices (called SNARE motifs) which mediate the interactions between SNARE proteins, and a transmembrane domain. The SNARE complex mediates membrane fusion, important for trafficking of newly synthesized proteins, recycling of pre-existing proteins and organelle formation. SNARE proteins are classified into four groups, Qa-, Qb-, Qc- and R-SNAREs, depending on whether the residue in the hydrophilic center layer of the four-helical bundle is a glutamine (Q) or arginine (R). Qa-, as well as Qb- and Qc-SNAREs, are localized to target organelle membranes, while R-SNARE is localized to vesicle membranes. They form unique complexes consisting of one member of each subgroup, that mediate fusion between a specific type of vesicles and their target organelle. Their SNARE motifs form twisted and parallel heterotetrameric helix bundles. This subgroup of the Qa SNAREs includes syntaxin 1, syntaxin 11, syntaxin 19, syntaxin 2, syntaxin 3, syntaxin 4 and related proteins.
Statistics
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PSSM-Id: 277201
Aligned: 80 rows
Threshold Bit Score: 59.0865
Created: 13-Apr-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
heterotetramerzero layer
Conserved site includes 50 residues -Click on image for an interactive view with Cn3D
Feature 1:heterotetramer interface [polypeptide binding site]
Evidence:
  • Structure:1SFC, Rattus norvegicus neuronal synaptic fusion complex; contacts 4A
  • Citation:PMID 9759724

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1     ## ###### ###### ###### ### ## ### ## ###### ##  ## ###### ####
1SFC_B     12 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 74  Norway rat
XP_650455 209 SLAYVKSKHDEIITIIRSIDELAQTFVDAAILVEMQGEMINNICDNCEQAKEYTTEALININK 271 Entamoeba histolytica HM-1:IMSS
BAE94802  132 ALNFLEERHRELLSINDAIEEINGMFVSLAVLIETQGELINSIEENCNSTKEYTKQINEELQR 194 Entamoeba histolytica
ELP86626  190 ALAYITAKHNDILILVGAIAELRQMFEDLSILVSRQGEVINKIEENCETALEYVKQGTQDLVK 252 Entamoeba invadens IP1
ELP85835  218 TLAYIKARHDEILCIVRSIDDLSQTFVDAAILVQMQGEMINDICKNCETAQEYTQLSVHRIQT 280 Entamoeba invadens IP1
ELP83914  177 TVDYLTKRHQELVEINNAINGVSEMFVSISVLLGMQGELIDSIEQNCDQTKEYSATINQELER 239 Entamoeba invadens IP1
BAM80115  232 EIADLEMRNREIASLEESIRELHQMFLDLSVLVESQGELIDQIETNVQGTRKSVKQGVKNLQR 294 Cyanidioschyzon merolae strain 10D
EME31412  274 VMEDVEERTRAMRQLEENIQELRQMFLDMSVLVEAQGETIDQIESNISSAKASTKTAASQLRG 336 Galdieria sulphuraria
BAM80638  289 VARDMEERAAALRELESGMEELRNIFLDMSVLVESQGETLDEIEKNIAAAKVSTKRGTRKLQT 351 Cyanidioschyzon merolae strain 10D
AAL87661  206 ILSDCMERNRAVQEIQKTAQEIHQLTMDAAMMCEQQSRLIEQIETNVLHAREAVQDGTTYLKK 268 Giardia intestinalis

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