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CDX1 caudal type homeobox 1 [ Rhinopithecus roxellana (golden snub-nosed monkey) ]

Gene ID: 104670409, updated on 12-Mar-2024

Summary

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Gene symbol
CDX1
Gene description
caudal type homeobox 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinopithecus roxellana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Rhinopithecus
Orthologs
human mouse all
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Genomic context

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See CDX1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ASM756505v1 (GCF_007565055.1) 3 NC_044551.1 (41266331..41284431, complement)
100 previous assembly Rrox_v1 (GCF_000769185.1) Unplaced Scaffold NW_010816159.1 (196075..214048)

Chromosome 3 - NC_044551.1Genomic Context describing neighboring genes Neighboring gene calcium/calmodulin dependent protein kinase II alpha Neighboring gene solute carrier family 6 member 7 Neighboring gene platelet derived growth factor receptor beta Neighboring gene colony stimulating factor 1 receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in animal organ morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in anterior/posterior axis specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in embryo development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein CDX-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinopithecus roxellana Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM756505v1 Primary Assembly

Genomic

  1. NC_044551.1 Reference ASM756505v1 Primary Assembly

    Range
    41266331..41284431 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010373629.2 → XP_010371931.2  homeobox protein CDX-1

    Conserved Domains (2) summary
    pfam00046
    Location:158 → 211
    Homeobox; Homeobox domain
    pfam04731
    Location:13 → 138
    Caudal_act; Caudal like protein activation region
Nucleotide Protein
Heading Accession and Version

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