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Rrox_v1

Organism name:
Rhinopithecus roxellana (golden snub-nosed monkey)
Isolate:
Xiao Hai
Sex:
male
BioSample:
SAMN02427086
BioProject:
PRJNA230020
Submitter:
Novogene
Date:
2014/10/28
Synonyms:
rhiRox1
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000769185.1 (latest)
RefSeq assembly accession:
GCF_000769185.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: 2 unlocalized scaffolds on chromosome MT (in non-nuclear assembly-unit)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for GenBank version
WGS Project:
JABR01
Assembly method:
SOAPdenovo v. 2013.04
Genome coverage:
53.7x
Sequencing technology:
Illumina HiSeq

IDs: 218671 [UID] 1366138 [GenBank] 1386258 [RefSeq]

See Genome Information for Rhinopithecus roxellana

There are 2 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length2,899,551,855
Total ungapped length2,856,043,601
Gaps between scaffolds0
Number of scaffolds135,513
Scaffold N501,549,224
Scaffold L50533
Number of contigs196,804
Contig N5077,151
Contig L5010,825
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)196,804

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,899,535,590135,5112,856,027,5871,549,22461,2850
MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MTAllAssembled moleculeUnlocalized scaffolds16,265016,26520216,014016,01415,692015,692606000
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