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LOC104661905 saoe class I histocompatibility antigen, A alpha chain-like [ Rhinopithecus roxellana (golden snub-nosed monkey) ]

Gene ID: 104661905, updated on 9-Nov-2023

Summary

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Gene symbol
LOC104661905
Gene description
saoe class I histocompatibility antigen, A alpha chain-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinopithecus roxellana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Rhinopithecus
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Genomic context

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Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
101 current ASM756505v1 (GCF_007565055.1) 4 NC_044552.1 (24914508..24927087, complement)
100 previous assembly Rrox_v1 (GCF_000769185.1) Unplaced Scaffold NW_010798269.1 (2423..5702, complement)

Chromosome 4 - NC_044552.1Genomic Context describing neighboring genes Neighboring gene dihydrofolate reductase pseudogene Neighboring gene HLA class I histocompatibility antigen, B-15 alpha chain-like Neighboring gene MHC class I polypeptide-related sequence B-like Neighboring gene uncharacterized LOC104682119

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptide antigen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in antigen processing and presentation of endogenous peptide antigen via MHC class Ib IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell mediated cytotoxicity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
saoe class I histocompatibility antigen, A alpha chain-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinopithecus roxellana Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM756505v1 Primary Assembly

Genomic

  1. NC_044552.1 Reference ASM756505v1 Primary Assembly

    Range
    24914508..24927087 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030929544.1 → XP_030785404.1  saoe class I histocompatibility antigen, A alpha chain-like

    Conserved Domains (3) summary
    cd07698
    Location:176 → 268
    IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    pfam00129
    Location:1 → 172
    MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
    pfam06623
    Location:312 → 329
    MHC_I_C; MHC_I C-terminus

  2. XM_030929543.1 → XP_030785403.1  saoe class I histocompatibility antigen, A alpha chain-like

    Conserved Domains (3) summary
    cd07698
    Location:176 → 268
    IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    pfam00129
    Location:1 → 172
    MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
    pfam06623
    Location:312 → 329
    MHC_I_C; MHC_I C-terminus
Nucleotide Protein
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