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MYOD1 myogenic differentiation 1 [ Tyto alba (common barn owl) ]

Gene ID: 104369334, updated on 12-Mar-2024

Summary

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Gene symbol
MYOD1
Gene description
myogenic differentiation 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Strigiformes; Tytonidae; Tyto
Orthologs
human mouse all
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Genomic context

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See MYOD1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881329.1 (5450867..5454486, complement)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_009981932.1 (13425..16386, complement)

NW_024881329.1Genomic Context describing neighboring genes Neighboring gene tryptophan hydroxylase 1 Neighboring gene secretion regulating guanine nucleotide exchange factor Neighboring gene potassium voltage-gated channel subfamily C member 1 Neighboring gene uncharacterized LOC122152594 Neighboring gene ferritin light chain Neighboring gene otogelin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in muscle organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of myoblast differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myoblast determination protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881329.1 Reference T.alba_DEE_v4.0

    Range
    5450867..5454486 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009976830.3 → XP_009975132.2  myoblast determination protein 1

    Conserved Domains (3) summary
    smart00520
    Location:7 → 106
    BASIC; Basic domain in HLH proteins of MYOD family
    cd18936
    Location:97 → 157
    bHLH_TS_MYOD1_Myf3; basic helix-loop-helix (bHLH) domain found in myoblast determination protein 1 (MYOD1) and similar proteins
    pfam12232
    Location:168 → 236
    Myf5; Myogenic determination factor 5
Nucleotide Protein
Heading Accession and Version

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