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EFTUD2 elongation factor Tu GTP binding domain containing 2 [ Egretta garzetta (little egret) ]

Gene ID: 104125999, updated on 3-Aug-2024

Summary

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Gene symbol
EFTUD2
Gene description
elongation factor Tu GTP binding domain containing 2
Locus tag
Z169_15023
Gene type
protein coding
RefSeq status
MODEL
Organism
Egretta garzetta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Ardeidae; Egretta
Orthologs
human mouse all
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Genomic context

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See EFTUD2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
101 current ASM68718v1 (GCF_000687185.1) Unplaced Scaffold NW_009259678.1 (23229..47160)

NW_009259678.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 187 member A Neighboring gene coiled-coil domain containing 103 Neighboring gene gap junction protein gamma 1 Neighboring gene ADAM metallopeptidase domain 11

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009259678 Unplaced Scaffold Reference ASM68718v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables U5 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2-type catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
116 kDa U5 small nuclear ribonucleoprotein component

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Egretta garzetta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68718v1 Primary Assembly

Genomic

  1. NW_009259678.1 Reference ASM68718v1 Primary Assembly

    Range
    23229..47160
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009638502.2 → XP_009636797.1  116 kDa U5 small nuclear ribonucleoprotein component isoform X1

    See identical proteins and their annotated locations for XP_009636797.1

    UniProtKB/TrEMBL
    A0A091J4Y2
    Conserved Domains (2) summary
    cl30786
    Location:122 → 954
    FusA; Translation elongation factor EF-G, a GTPase [Translation, ribosomal structure and biogenesis]
    pfam16004
    Location:4 → 110
    EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component N-terminus

  2. XM_035893993.1 → XP_035749886.1  116 kDa U5 small nuclear ribonucleoprotein component isoform X2

    Conserved Domains (2) summary
    cl30786
    Location:122 → 925
    FusA; Translation elongation factor EF-G, a GTPase [Translation, ribosomal structure and biogenesis]
    pfam16004
    Location:4 → 110
    EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component N-terminus

  3. XM_035893995.1 → XP_035749888.1  116 kDa U5 small nuclear ribonucleoprotein component isoform X4

    Conserved Domains (2) summary
    cl30786
    Location:122 → 805
    FusA; Translation elongation factor EF-G, a GTPase [Translation, ribosomal structure and biogenesis]
    pfam16004
    Location:4 → 110
    EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component N-terminus

  4. XM_035893994.1 → XP_035749887.1  116 kDa U5 small nuclear ribonucleoprotein component isoform X3

    Conserved Domains (2) summary
    cl30786
    Location:36 → 868
    FusA; Translation elongation factor EF-G, a GTPase [Translation, ribosomal structure and biogenesis]
    pfam16004
    Location:5 → 24
    EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component N-terminus
Nucleotide Protein
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