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Synj1 synaptojanin 1 [ Mus musculus (house mouse) ]

Gene ID: 104015, updated on 6-Jun-2024

Summary

Official Symbol
Synj1provided by MGI
Official Full Name
synaptojanin 1provided by MGI
Primary source
MGI:MGI:1354961
See related
Ensembl:ENSMUSG00000022973 AllianceGenome:MGI:1354961
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
mKIAA0910; A930006D20Rik
Summary
Enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity. Involved in postsynaptic neurotransmitter receptor internalization; regulation of postsynaptic neurotransmitter receptor internalization; and synaptic vesicle uncoating. Acts upstream of or within several processes, including dephosphorylation; synaptic vesicle cycle; and synaptic vesicle transport. Located in Schaffer collateral - CA1 synapse and glutamatergic synapse. Part of membrane coat. Is expressed in several structures, including central nervous system; genitourinary system; peripheral nervous system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in Parkinson's disease; Parkinson's disease 20; and developmental and epileptic encephalopathy 53. Orthologous to human SYNJ1 (synaptojanin 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in frontal lobe adult (RPKM 17.6), cortex adult (RPKM 16.9) and 26 other tissues See more
Orthologs
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Genomic context

See Synj1 in Genome Data Viewer
Location:
16 C3.3; 16 52.18 cM
Exon count:
36
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (90732980..90810543, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (90936092..91013727, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene eva-1 homolog C Neighboring gene predicted gene, 36363 Neighboring gene STARR-seq mESC enhancer starr_41466 Neighboring gene STARR-seq mESC enhancer starr_41467 Neighboring gene STARR-seq mESC enhancer starr_41468 Neighboring gene predicted gene, 53919 Neighboring gene STARR-positive B cell enhancer ABC_E4188 Neighboring gene cilia and flagella associate protien 298 Neighboring gene RIKEN cDNA 4930404I05 gene Neighboring gene STARR-positive B cell enhancer mm9_chr16:91012148-91012449 Neighboring gene STARR-seq mESC enhancer starr_41471 Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene exosomal polycystin 1 interacting protein

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Process Evidence Code Pubs
acts_upstream_of_or_within learning IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in learning ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within neurotransmitter transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in phosphatidylinositol dephosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within phosphatidylinositol dephosphorylation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in phosphatidylinositol dephosphorylation ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within phosphatidylinositol metabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within phosphatidylinositol metabolic process TAS
Traceable Author Statement
more info
PubMed 
acts_upstream_of_or_within phosphatidylinositol-mediated signaling TAS
Traceable Author Statement
more info
PubMed 
involved_in positive regulation of endosome organization ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of gliogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of receptor-mediated endocytosis ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of synaptic vesicle recycling TAS
Traceable Author Statement
more info
PubMed 
involved_in postsynaptic neurotransmitter receptor internalization IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of postsynaptic neurotransmitter receptor internalization IDA
Inferred from Direct Assay
more info
PubMed 
involved_in regulation of postsynaptic neurotransmitter receptor internalization IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in response to cytokine ISO
Inferred from Sequence Orthology
more info
 
involved_in response to retinoic acid ISO
Inferred from Sequence Orthology
more info
 
involved_in synaptic vesicle endocytosis IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within synaptic vesicle endocytosis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in synaptic vesicle endocytosis ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within synaptic vesicle priming IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within synaptic vesicle transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in synaptic vesicle uncoating IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within synaptic vesicle uncoating IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in synaptic vesicle uncoating IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
is_active_in Schaffer collateral - CA1 synapse IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in Schaffer collateral - CA1 synapse IMP
Inferred from Mutant Phenotype
more info
PubMed 
part_of clathrin coat TAS
Traceable Author Statement
more info
PubMed 
part_of clathrin coat of coated pit ISO
Inferred from Sequence Orthology
more info
 
is_active_in glutamatergic synapse IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in glutamatergic synapse IMP
Inferred from Mutant Phenotype
more info
PubMed 
located_in membrane ISO
Inferred from Sequence Orthology
more info
 
part_of membrane coat IDA
Inferred from Direct Assay
more info
PubMed 
colocalizes_with microtubule ISO
Inferred from Sequence Orthology
more info
 
is_active_in parallel fiber to Purkinje cell synapse ISO
Inferred from Sequence Orthology
more info
 
is_active_in perinuclear region of cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in presynapse IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in presynapse ISO
Inferred from Sequence Orthology
more info
 
located_in presynapse ISO
Inferred from Sequence Orthology
more info
 
part_of protein-containing complex ISO
Inferred from Sequence Orthology
more info
 
located_in synaptic membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
synaptojanin-1
Names
synaptic inositol 1,4,5-trisphosphate 5-phosphatase 1
NP_001038980.1
NP_001157955.1
NP_001392321.1
NP_001392322.1
NP_001392323.1
NP_001392324.1
NP_001392325.1
NP_001392326.1
NP_001392328.1
NP_001392329.1
NP_001392330.1
NP_001392331.1
NP_001392332.1
NP_001392333.1
NP_001392334.1
NP_001392335.1
NP_001392336.1
NP_001392337.1
NP_001392339.1
XP_006522900.1
XP_006522909.1
XP_011244377.1
XP_011244378.1
XP_011244379.1
XP_011244380.1
XP_011244381.1
XP_011244382.1
XP_011244383.1
XP_011244384.1
XP_011244385.1
XP_011244386.1
XP_011244387.1
XP_011244389.1
XP_011244391.1
XP_017172325.1
XP_017172326.1
XP_017172328.1
XP_017172329.1
XP_017172330.1
XP_030104762.1
XP_030104763.1
XP_030104765.1
XP_030104766.1
XP_030104768.1
XP_030104769.1
XP_030104770.1
XP_036015603.1
XP_036015605.1
XP_036015606.1
XP_036015610.1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045515.2NP_001038980.1  synaptojanin-1 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) represents use of an alternate promoter and 5' UTR, uses a downstream start codon, and includes an alternate exon in the 3' coding region resulting in a frameshift, compared to variant 1. The resulting isoform (b) has a shorter N-terminus and a shorter and distinct C-terminus, compared to isoform a.
    Source sequence(s)
    AC134560, AC141885
    Consensus CDS
    CCDS49906.1
    UniProtKB/TrEMBL
    E9Q7S0, F7BQW7
    Related
    ENSMUSP00000128997.2, ENSMUST00000170853.8
    Conserved Domains (3) summary
    cd09098
    Location:533868
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:60340
    Syja_N; SacI homology domain
    cl17169
    Location:8671008
    RRM_SF; RNA recognition motif (RRM) superfamily
  2. NM_001164483.2NP_001157955.1  synaptojanin-1 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
    Source sequence(s)
    AC134560, AC141885
    Consensus CDS
    CCDS49907.1
    UniProtKB/Swiss-Prot
    Q8CHC4
    UniProtKB/TrEMBL
    D3Z656
    Related
    ENSMUSP00000113308.2, ENSMUST00000121759.8
    Conserved Domains (3) summary
    cd09098
    Location:573908
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:100380
    Syja_N; SacI homology domain
    cl17169
    Location:9071048
    RRM_SF; RNA recognition motif (RRM) superfamily
  3. NM_001405392.1NP_001392321.1  synaptojanin-1 isoform c

    Status: VALIDATED

    Source sequence(s)
    AC134560, AC141885
    UniProtKB/Swiss-Prot
    Q8CHC4
  4. NM_001405393.1NP_001392322.1  synaptojanin-1 isoform d

    Status: VALIDATED

    Source sequence(s)
    AC134560, AC141885
    UniProtKB/Swiss-Prot
    Q8CHC4
  5. NM_001405394.1NP_001392323.1  synaptojanin-1 isoform e

    Status: VALIDATED

    Source sequence(s)
    AC134560, AC141885
    UniProtKB/Swiss-Prot
    Q8CHC4
  6. NM_001405395.1NP_001392324.1  synaptojanin-1 isoform f

    Status: VALIDATED

    Source sequence(s)
    AC134560, AC141885
    UniProtKB/TrEMBL
    F7BQW7
    Related
    ENSMUSP00000113518.3, ENSMUST00000118390.10
  7. NM_001405396.1NP_001392325.1  synaptojanin-1 isoform g

    Status: VALIDATED

    Source sequence(s)
    AC134560, AC141885
    UniProtKB/TrEMBL
    F7BQW7
  8. NM_001405397.1NP_001392326.1  synaptojanin-1 isoform h

    Status: VALIDATED

    Source sequence(s)
    AC134560, AC141885
    UniProtKB/TrEMBL
    F7BQW7
  9. NM_001405399.1NP_001392328.1  synaptojanin-1 isoform i

    Status: VALIDATED

    Source sequence(s)
    AC134560, AC141885
    UniProtKB/TrEMBL
    F7BQW7
  10. NM_001405400.1NP_001392329.1  synaptojanin-1 isoform j

    Status: VALIDATED

    Source sequence(s)
    AC134560, AC141885
    UniProtKB/TrEMBL
    F7BQW7
  11. NM_001405401.1NP_001392330.1  synaptojanin-1 isoform k

    Status: VALIDATED

    Source sequence(s)
    AC134560, AC141885
    UniProtKB/TrEMBL
    F7BQW7
  12. NM_001405402.1NP_001392331.1  synaptojanin-1 isoform l

    Status: VALIDATED

    Source sequence(s)
    AC134560, AC141885
    UniProtKB/TrEMBL
    F7BQW7
  13. NM_001405403.1NP_001392332.1  synaptojanin-1 isoform m

    Status: VALIDATED

    Source sequence(s)
    AC134560, AC141885
    UniProtKB/TrEMBL
    F7BQW7
  14. NM_001405404.1NP_001392333.1  synaptojanin-1 isoform n

    Status: VALIDATED

    Source sequence(s)
    AC134560, AC141885
    UniProtKB/TrEMBL
    F7BQW7
  15. NM_001405405.1NP_001392334.1  synaptojanin-1 isoform o

    Status: VALIDATED

    Source sequence(s)
    AC134560, AC141885
    UniProtKB/TrEMBL
    F7BQW7
  16. NM_001405406.1NP_001392335.1  synaptojanin-1 isoform p

    Status: VALIDATED

    Source sequence(s)
    AC134560, AC141885
    UniProtKB/TrEMBL
    F7BQW7
  17. NM_001405407.1NP_001392336.1  synaptojanin-1 isoform q

    Status: VALIDATED

    Source sequence(s)
    AC134560, AC141885
    UniProtKB/TrEMBL
    F7BQW7
  18. NM_001405408.1NP_001392337.1  synaptojanin-1 isoform r

    Status: VALIDATED

    Source sequence(s)
    AC134560, AC141885
    UniProtKB/TrEMBL
    F7BQW7
  19. NM_001405410.1NP_001392339.1  synaptojanin-1 isoform s

    Status: VALIDATED

    Source sequence(s)
    AC134560, AC141885
    UniProtKB/TrEMBL
    F7BQW7

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    90732980..90810543 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030248902.2XP_030104762.1  synaptojanin-1 isoform X3

    UniProtKB/Swiss-Prot
    Q8CHC4
    Conserved Domains (4) summary
    cd09098
    Location:6691004
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:11961598
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:204624
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:10031144
    RRM_SF; RNA recognition motif (RRM) superfamily
  2. XM_036159712.1XP_036015605.1  synaptojanin-1 isoform X14

    UniProtKB/Swiss-Prot
    Q8CHC4
    Conserved Domains (4) summary
    cd09098
    Location:6771012
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    COG5329
    Location:204624
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam03154
    Location:11541544
    Atrophin-1; Atrophin-1 family
    cl17169
    Location:10111152
    RRM_SF; RNA recognition motif (RRM) superfamily
  3. XM_017316840.3XP_017172329.1  synaptojanin-1 isoform X37

    UniProtKB/TrEMBL
    F7BQW7
    Conserved Domains (4) summary
    cd09098
    Location:6771012
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    COG5329
    Location:204624
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam03154
    Location:11541378
    Atrophin-1; Atrophin-1 family
    cl17169
    Location:10111152
    RRM_SF; RNA recognition motif (RRM) superfamily
  4. XM_030248903.2XP_030104763.1  synaptojanin-1 isoform X9

    UniProtKB/Swiss-Prot
    Q8CHC4
    Conserved Domains (4) summary
    cd09098
    Location:6771012
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    COG5329
    Location:204624
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam03154
    Location:11541557
    Atrophin-1; Atrophin-1 family
    cl17169
    Location:10111152
    RRM_SF; RNA recognition motif (RRM) superfamily
  5. XM_017316836.3XP_017172325.1  synaptojanin-1 isoform X10

    UniProtKB/Swiss-Prot
    Q8CHC4
    Conserved Domains (4) summary
    cd09098
    Location:6771012
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:12041577
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:204624
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:10111152
    RRM_SF; RNA recognition motif (RRM) superfamily
  6. XM_006522837.5XP_006522900.1  synaptojanin-1 isoform X6

    UniProtKB/Swiss-Prot
    Q8CHC4
    Conserved Domains (4) summary
    cd09098
    Location:6771012
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    COG5329
    Location:204624
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam03154
    Location:11541570
    Atrophin-1; Atrophin-1 family
    cl17169
    Location:10111152
    RRM_SF; RNA recognition motif (RRM) superfamily
  7. XM_011246082.4XP_011244384.1  synaptojanin-1 isoform X15

    UniProtKB/Swiss-Prot
    Q8CHC4
    Conserved Domains (4) summary
    cd09098
    Location:6721007
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    COG5329
    Location:204627
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam03154
    Location:11491539
    Atrophin-1; Atrophin-1 family
    cl17169
    Location:10061147
    RRM_SF; RNA recognition motif (RRM) superfamily
  8. XM_017316841.3XP_017172330.1  synaptojanin-1 isoform X38

    UniProtKB/TrEMBL
    F7BQW7
    Conserved Domains (4) summary
    cd09098
    Location:6721007
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    COG5329
    Location:204627
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam03154
    Location:11491373
    Atrophin-1; Atrophin-1 family
    cl17169
    Location:10061147
    RRM_SF; RNA recognition motif (RRM) superfamily
  9. XM_036159710.1XP_036015603.1  synaptojanin-1 isoform X11

    UniProtKB/Swiss-Prot
    Q8CHC4
    Conserved Domains (4) summary
    cd09098
    Location:6721007
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    COG5329
    Location:204627
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam03154
    Location:11721552
    Atrophin-1; Atrophin-1 family
    cl17169
    Location:10061147
    RRM_SF; RNA recognition motif (RRM) superfamily
  10. XM_011246076.4XP_011244378.1  synaptojanin-1 isoform X2

    UniProtKB/Swiss-Prot
    Q8CHC4
    Conserved Domains (4) summary
    cd09098
    Location:6721007
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:11991601
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:204627
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:10061147
    RRM_SF; RNA recognition motif (RRM) superfamily
  11. XM_011246081.4XP_011244383.1  synaptojanin-1 isoform X13

    UniProtKB/Swiss-Prot
    Q8CHC4
    Conserved Domains (4) summary
    cd09098
    Location:6801015
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    COG5329
    Location:204627
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam03154
    Location:11571547
    Atrophin-1; Atrophin-1 family
    cl17169
    Location:10141155
    RRM_SF; RNA recognition motif (RRM) superfamily
  12. XM_030248910.2XP_030104770.1  synaptojanin-1 isoform X36

    UniProtKB/TrEMBL
    F7BQW7
    Conserved Domains (4) summary
    cd09098
    Location:6801015
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    COG5329
    Location:204627
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam03154
    Location:11571381
    Atrophin-1; Atrophin-1 family
    cl17169
    Location:10141155
    RRM_SF; RNA recognition motif (RRM) superfamily
  13. XM_017316839.3XP_017172328.1  synaptojanin-1 isoform X35

    UniProtKB/TrEMBL
    F7BQW7
    Conserved Domains (4) summary
    cd09098
    Location:6801015
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    COG5329
    Location:204627
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam03154
    Location:11571381
    Atrophin-1; Atrophin-1 family
    cl17169
    Location:10141155
    RRM_SF; RNA recognition motif (RRM) superfamily
  14. XM_011246079.4XP_011244381.1  synaptojanin-1 isoform X7

    UniProtKB/Swiss-Prot
    Q8CHC4
    Conserved Domains (4) summary
    cd09098
    Location:6801015
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    COG5329
    Location:204627
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam03154
    Location:11571560
    Atrophin-1; Atrophin-1 family
    cl17169
    Location:10141155
    RRM_SF; RNA recognition motif (RRM) superfamily
  15. XM_030248908.2XP_030104768.1  synaptojanin-1 isoform X31

    UniProtKB/TrEMBL
    F7BQW7
    Conserved Domains (4) summary
    cd09098
    Location:6801015
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    COG5329
    Location:204627
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    PRK07764
    Location:12001394
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cl17169
    Location:10141155
    RRM_SF; RNA recognition motif (RRM) superfamily
  16. XM_011246077.4XP_011244379.1  synaptojanin-1 isoform X4

    UniProtKB/Swiss-Prot
    Q8CHC4
    Conserved Domains (4) summary
    cd09098
    Location:6801015
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    COG5329
    Location:204627
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam03154
    Location:11571576
    Atrophin-1; Atrophin-1 family
    cl17169
    Location:10141155
    RRM_SF; RNA recognition motif (RRM) superfamily
  17. XM_011246080.4XP_011244382.1  synaptojanin-1 isoform X8

    UniProtKB/Swiss-Prot
    Q8CHC4
    Conserved Domains (4) summary
    cd09098
    Location:6801015
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:12071580
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:204627
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:10141155
    RRM_SF; RNA recognition motif (RRM) superfamily
  18. XM_036159717.1XP_036015610.1  synaptojanin-1 isoform X33

    UniProtKB/TrEMBL
    F7BQW7
    Conserved Domains (4) summary
    cd09098
    Location:6801015
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:12011424
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:204627
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:10141155
    RRM_SF; RNA recognition motif (RRM) superfamily
  19. XM_030248909.2XP_030104769.1  synaptojanin-1 isoform X32

    UniProtKB/TrEMBL
    F7BQW7
    Conserved Domains (4) summary
    cd09098
    Location:6801015
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:12011397
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:204627
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:10141155
    RRM_SF; RNA recognition motif (RRM) superfamily
  20. XM_011246078.4XP_011244380.1  synaptojanin-1 isoform X5

    UniProtKB/Swiss-Prot
    Q8CHC4
    Conserved Domains (4) summary
    cd09098
    Location:6801015
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    COG5329
    Location:204627
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam03154
    Location:11571573
    Atrophin-1; Atrophin-1 family
    cl17169
    Location:10141155
    RRM_SF; RNA recognition motif (RRM) superfamily
  21. XM_011246075.4XP_011244377.1  synaptojanin-1 isoform X1

    UniProtKB/Swiss-Prot
    Q8CHC4
    Conserved Domains (4) summary
    cd09098
    Location:6801015
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:12071609
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:204627
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:10141155
    RRM_SF; RNA recognition motif (RRM) superfamily
  22. XM_011246085.4XP_011244387.1  synaptojanin-1 isoform X24

    See identical proteins and their annotated locations for XP_011244387.1

    UniProtKB/TrEMBL
    F7BQW7
    Conserved Domains (4) summary
    cd09098
    Location:6801015
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03378
    Location:11191423
    PHA03378; EBNA-3B; Provisional
    COG5329
    Location:204627
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:10141155
    RRM_SF; RNA recognition motif (RRM) superfamily
  23. XM_017316837.3XP_017172326.1  synaptojanin-1 isoform X23

    UniProtKB/TrEMBL
    F7BQW7
    Conserved Domains (4) summary
    cd09098
    Location:6801015
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03378
    Location:11191423
    PHA03378; EBNA-3B; Provisional
    COG5329
    Location:204627
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:10141155
    RRM_SF; RNA recognition motif (RRM) superfamily
  24. XM_030248905.2XP_030104765.1  synaptojanin-1 isoform X18

    UniProtKB/Swiss-Prot
    Q8CHC4
    Conserved Domains (4) summary
    cd09098
    Location:533868
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:10601462
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:60480
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:8671008
    RRM_SF; RNA recognition motif (RRM) superfamily
  25. XM_030248906.1XP_030104766.1  synaptojanin-1 isoform X20

    UniProtKB/Swiss-Prot
    Q8CHC4
    Conserved Domains (4) summary
    cd09098
    Location:525860
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:10521454
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:60480
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:8591000
    RRM_SF; RNA recognition motif (RRM) superfamily
  26. XM_036159713.1XP_036015606.1  synaptojanin-1 isoform X21

    UniProtKB/Swiss-Prot
    Q8CHC4
    Conserved Domains (4) summary
    cd09098
    Location:528863
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    COG5329
    Location:60483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam03154
    Location:10051395
    Atrophin-1; Atrophin-1 family
    cl17169
    Location:8621003
    RRM_SF; RNA recognition motif (RRM) superfamily
  27. XM_011246084.1XP_011244386.1  synaptojanin-1 isoform X19

    UniProtKB/Swiss-Prot
    Q8CHC4
    Conserved Domains (4) summary
    cd09098
    Location:528863
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:10551457
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:60483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:8621003
    RRM_SF; RNA recognition motif (RRM) superfamily
  28. XM_011246083.1XP_011244385.1  synaptojanin-1 isoform X17

    UniProtKB/Swiss-Prot
    Q8CHC4
    Conserved Domains (4) summary
    cd09098
    Location:536871
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:10631465
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:60483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:8701011
    RRM_SF; RNA recognition motif (RRM) superfamily
  29. XM_011246089.4XP_011244391.1  synaptojanin-1 isoform X43

    Conserved Domains (4) summary
    cd09098
    Location:86421
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:6071015
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:233
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:420561
    RRM_SF; RNA recognition motif (RRM) superfamily
  30. XM_006522846.4XP_006522909.1  synaptojanin-1 isoform X44

    Conserved Domains (3) summary
    cd09098
    Location:14349
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:535943
    PHA03247; large tegument protein UL36; Provisional
    cl17169
    Location:348489
    RRM_SF; RNA recognition motif (RRM) superfamily
  31. XM_011246087.4XP_011244389.1  synaptojanin-1 isoform X25

    UniProtKB/TrEMBL
    F7BQW7
    Conserved Domains (4) summary
    cd09098
    Location:6801015
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03378
    Location:11191423
    PHA03378; EBNA-3B; Provisional
    COG5329
    Location:204627
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:10141155
    RRM_SF; RNA recognition motif (RRM) superfamily

RNA

  1. XR_876128.4 RNA Sequence

  2. XR_004939141.1 RNA Sequence

  3. XR_004939140.1 RNA Sequence