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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_030017.1Â RefSeqGene
- Range
-
5001..104283
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001160302.1 → NP_001153774.1  synaptojanin-1 isoform c
See identical proteins and their annotated locations for NP_001153774.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in its 5' UTR, 5' coding region and 3' coding region, and uses a downstream translational start codon, compared to variant 1. The encoded isoform (c) has a shorter N-terminus, a distinct C-terminus, and is shorter than isoform a.
- Source sequence(s)
-
AB020717, AP000275, BP350252, CA944966
- Consensus CDS
-
CCDS54483.1
- UniProtKB/Swiss-Prot
-
O43426
- Related
- ENSP00000349903.3, ENST00000357345.7
- Conserved Domains (5) summary
-
- cd09098
Location:533 → 868
- INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
- PRK05641
Location:1017 → 1097
- PRK05641; putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
- pfam02383
Location:60 → 340
- Syja_N; SacI homology domain
- pfam08952
Location:867 → 1008
- DUF1866; Domain of unknown function (DUF1866)
- pfam11235
Location:1078 → 1262
- Med25_SD1; Mediator complex subunit 25 synapsin 1
-
NM_001160306.2 → NP_001153778.1  synaptojanin-1 isoform d
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR, uses a downstream translational start codon, and has multiple differences in the coding region, compared to variant 1. The encoded isoform (d) has a shorter N-terminus, a distinct C-terminus, and is shorter than isoform a.
- Source sequence(s)
-
AB020717, BC098395, BC136603, BP350252, CA944966
- Consensus CDS
-
CCDS54484.1
- UniProtKB/Swiss-Prot
-
O43426
- UniProtKB/TrEMBL
- A0A0D9SGJ6, B9EGN3
- Related
- ENSP00000487560.1, ENST00000630077.3
- Conserved Domains (4) summary
-
- cd09098
Location:528 → 863
- INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
- pfam02383
Location:60 → 340
- Syja_N; SacI homology domain
- pfam08952
Location:862 → 1003
- DUF1866; Domain of unknown function (DUF1866)
- pfam11235
Location:1054 → 1231
- Med25_SD1; Mediator complex subunit 25 synapsin 1
-
NM_003895.3 → NP_003886.3  synaptojanin-1 isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (a).
- Source sequence(s)
-
AB020717, AF009040, AP000279, BC019630, CA944966, DB071394
- Consensus CDS
-
CCDS33539.2
- UniProtKB/Swiss-Prot
-
O43426
- UniProtKB/TrEMBL
- J3KQV8, Q05CZ1
- Related
- ENSP00000409667.2, ENST00000433931.7
- Conserved Domains (3) summary
-
- cd09098
Location:572 → 907
- INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
- pfam02383
Location:99 → 379
- Syja_N; SacI homology domain
- pfam08952
Location:906 → 1047
- DUF1866; Domain of unknown function (DUF1866)
-
NM_203446.3 → NP_982271.3  synaptojanin-1 isoform b
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) includes an alternate exon in the 3' coding region that causes a frameshift, compared to variant 1. The encoded isoform (b) has a distinct and shorter C-terminus, compared to isoform a.
- Source sequence(s)
-
AB020717, AF009039, AF009040, AP000275, AP000279, BC019630
- Consensus CDS
-
CCDS33540.2
- Related
- ENSP00000501530.1, ENST00000674351.1
- Conserved Domains (4) summary
-
- cd09098
Location:533 → 868
- INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
- PHA03247
Location:1054 → 1278
- PHA03247; large tegument protein UL36; Provisional
- COG5329
Location:34 → 480
- COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
- pfam08952
Location:867 → 1008
- DUF1866; Domain of unknown function (DUF1866)