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HDAC2 histone deacetylase 2 [ Nipponia nippon (crested ibis) ]

Gene ID: 104008583, updated on 12-Mar-2024

Summary

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Gene symbol
HDAC2
Gene description
histone deacetylase 2
Locus tag
Y956_05313
Gene type
protein coding
RefSeq status
MODEL
Organism
Nipponia nippon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Threskiornithidae; Nipponia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current ASM70822v1 (GCF_000708225.1) Unplaced Scaffold NW_008998002.1 (74098..91220, complement)

NW_008998002.1Genomic Context describing neighboring genes Neighboring gene heparan sulfate-glucosamine 3-sulfotransferase 5 Neighboring gene fyn related Src family tyrosine kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008998002.1 Unplaced Scaffold Reference ASM70822v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nipponia nippon Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70822v1 Primary Assembly

Genomic

  1. NW_008998002.1 Reference ASM70822v1 Primary Assembly

    Range
    74098..91220 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009460482.1 → XP_009458757.1  histone deacetylase 2

    See identical proteins and their annotated locations for XP_009458757.1

    UniProtKB/TrEMBL
    A0A091UKK0
    Conserved Domains (2) summary
    pfam05793
    Location:357 → 446
    TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
    cl17011
    Location:1 → 344
    Arginase_HDAC; Arginase-like and histone-like hydrolases
Nucleotide Protein
Heading Accession and Version

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