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SMC1B structural maintenance of chromosomes 1B [ Pygoscelis adeliae (Adelie penguin) ]

Gene ID: 103916625, updated on 11-Mar-2024

Summary

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Gene symbol
SMC1B
Gene description
structural maintenance of chromosomes 1B
Gene type
protein coding
RefSeq status
MODEL
Organism
Pygoscelis adeliae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Sphenisciformes; Spheniscidae; Pygoscelis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
100 current ASM69910v1 (GCF_000699105.1) Unplaced Scaffold NW_008824770.1 (546274..584648, complement)

NW_008824770.1Genomic Context describing neighboring genes Neighboring gene uroplakin 3A Neighboring gene family with sequence similarity 118 member A Neighboring gene RIB43A domain with coiled-coils 2 Neighboring gene fibulin 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008824770.1 Unplaced Scaffold Reference ASM69910v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sister chromatid cohesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of cohesin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
structural maintenance of chromosomes protein 1B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pygoscelis adeliae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69910v1 Primary Assembly

Genomic

  1. NW_008824770.1 Reference ASM69910v1 Primary Assembly

    Range
    546274..584648 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009323640.1 → XP_009321915.1  structural maintenance of chromosomes protein 1B

    Conserved Domains (4) summary
    cd03275
    Location:4 → 148
    ABC_SMC1_euk; ATP-binding cassette domain of eukaryotic SMC1 proteins
    smart00968
    Location:512 → 627
    SMC_hinge; SMC proteins Flexible Hinge Domain
    COG1196
    Location:3 → 1221
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl19219
    Location:410 → 491
    DUF342; Protein of unknown function (DUF342)
Nucleotide Protein
Heading Accession and Version

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