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PGBD4 piggyBac transposable element derived 4 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 103795656, updated on 11-Mar-2024

Summary

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Gene symbol
PGBD4
Gene description
piggyBac transposable element derived 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human all
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Genomic context

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See PGBD4 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 10 NC_071451.1 (49608837..49614174)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 10 NC_048392.1 (50291286..50296641)

Chromosome 10 - NC_071451.1Genomic Context describing neighboring genes Neighboring gene apoptosis and caspase activation inhibitor Neighboring gene cholinergic receptor muscarinic 5 Neighboring gene 60S ribosomal protein L32-like Neighboring gene ER membrane protein complex subunit 7 Neighboring gene katanin regulatory subunit B1 like 1 Neighboring gene solute carrier family 12 member 6 Neighboring gene ER membrane protein complex subunit 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
piggyBac transposable element-derived protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071451.1 Reference mCalJa1.2.pat.X

    Range
    49608837..49614174
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009005616.4 → XP_009003864.1  piggyBac transposable element-derived protein 4

    UniProtKB/TrEMBL
    F7FDY8
    Conserved Domains (2) summary
    pfam13842
    Location:539 → 575
    Tnp_zf-ribbon_2; DDE_Tnp_1-like zinc-ribbon
    pfam13843
    Location:103 → 468
    DDE_Tnp_1_7; Transposase IS4
Nucleotide Protein
Heading Accession and Version

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