U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

USP40 ubiquitin specific peptidase 40 [ Ursus maritimus (polar bear) ]

Gene ID: 103662657, updated on 11-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
USP40
Gene description
ubiquitin specific peptidase 40
See related
Ensembl:ENSUMAG00000013473
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
38
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Unplaced Scaffold NW_024423343.1 (6764643..6840180)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007907114.1 (6693623..6768932)

NW_024423343.1Genomic Context describing neighboring genes Neighboring gene UDP-glucuronosyltransferase 1-6-like Neighboring gene DnaJ heat shock protein family (Hsp40) member B3 Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene diacylglycerol kinase delta Neighboring gene S-antigen visual arrestin

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ubiquitin carboxyl-terminal hydrolase 40

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024423343.1 Reference ASM1731132v1 Primary Assembly

    Range
    6764643..6840180
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040638806.1 → XP_040494740.1  ubiquitin carboxyl-terminal hydrolase 40 isoform X3

    UniProtKB/TrEMBL
    A0A452UC05, A0A452UC23
    Conserved Domains (2) summary
    cd02659
    Location:39 → 382
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    TIGR03670
    Location:659 → 720
    rpoB_arch; DNA-directed RNA polymerase subunit B

  2. XM_040638815.1 → XP_040494749.1  ubiquitin carboxyl-terminal hydrolase 40 isoform X3

    UniProtKB/TrEMBL
    A0A452UC05, A0A452UC23
    Conserved Domains (2) summary
    cd02659
    Location:39 → 382
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    TIGR03670
    Location:659 → 720
    rpoB_arch; DNA-directed RNA polymerase subunit B

  3. XM_008690313.2 → XP_008688535.1  ubiquitin carboxyl-terminal hydrolase 40 isoform X2

    UniProtKB/TrEMBL
    A0A384C2A3, A0A452UC05
    Related
    ENSUMAP00000018349.1
    Conserved Domains (2) summary
    cd02659
    Location:63 → 406
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam13423
    Location:65 → 335
    UCH_1; Ubiquitin carboxyl-terminal hydrolase

  4. XM_040638796.1 → XP_040494730.1  ubiquitin carboxyl-terminal hydrolase 40 isoform X1

    UniProtKB/TrEMBL
    A0A452UC05, A0A8M1GIG6
    Conserved Domains (2) summary
    cd02659
    Location:78 → 421
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    TIGR03670
    Location:698 → 759
    rpoB_arch; DNA-directed RNA polymerase subunit B

  5. XM_040638825.1 → XP_040494759.1  ubiquitin carboxyl-terminal hydrolase 40 isoform X4

    UniProtKB/TrEMBL
    A0A452UC05, A0A8M1GT93
    Conserved Domains (2) summary
    TIGR03670
    Location:531 → 592
    rpoB_arch; DNA-directed RNA polymerase subunit B
    cl02553
    Location:1 → 254
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...

  6. XM_040638832.1 → XP_040494766.1  ubiquitin carboxyl-terminal hydrolase 40 isoform X5

    UniProtKB/TrEMBL
    A0A452UC05, A0A8M1GGH7
    Conserved Domains (2) summary
    TIGR03670
    Location:455 → 516
    rpoB_arch; DNA-directed RNA polymerase subunit B
    cl02553
    Location:2 → 178
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...

  7. XM_040638839.1 → XP_040494773.1  ubiquitin carboxyl-terminal hydrolase 40 isoform X6

    UniProtKB/TrEMBL
    A0A8M1GGI0
    Conserved Domains (1) summary
    cd17039
    Location:31 → 98
    Ubl_ubiquitin_like; ubiquitin-like (Ubl) domain found in ubiquitin and ubiquitin-like Ubl proteins

  8. XM_040638846.1 → XP_040494780.1  ubiquitin carboxyl-terminal hydrolase 40 isoform X7

    UniProtKB/TrEMBL
    A0A8M1GIL1

  9. XM_040638850.1 → XP_040494784.1  ubiquitin carboxyl-terminal hydrolase 40 isoform X8

    UniProtKB/TrEMBL
    A0A8M1GTC0

  10. XM_040638857.1 → XP_040494791.1  ubiquitin carboxyl-terminal hydrolase 40 isoform X9

    UniProtKB/TrEMBL
    A0A8M1GGK0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.