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HMGB1P3 high mobility group box 1 pseudogene 3 [ Homo sapiens (human) ]

Gene ID: 10356, updated on 17-Sep-2024

Summary

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Official Symbol
HMGB1P3provided by HGNC
Official Full Name
high mobility group box 1 pseudogene 3provided by HGNC
Primary source
HGNC:HGNC:4995
See related
AllianceGenome:HGNC:4995
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HMG1L3; HMGB1L3
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Genomic context

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See HMGB1P3 in Genome Data Viewer
Location:
2q37.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (230514924..230516086)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (230997984..230999146)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (231379639..231380801)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene SP140 nuclear body protein like Neighboring gene uncharacterized LOC105373925 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17220 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12410 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17221 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17222 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17223 Neighboring gene uncharacterized LOC101928816 Neighboring gene SP100 nuclear antigen Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17224 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17225 Neighboring gene RNA, 7SL, cytoplasmic 834, pseudogene Neighboring gene MPRA-validated peak4076 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17226 Neighboring gene uncharacterized LOC112268431 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17227 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17228 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17229 Neighboring gene tropomyosin 3 pseudogene 8 Neighboring gene RNA, U6 small nuclear 451, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Back to the roots of a new exon--the molecular archaeology of a SP100 splice variant. Rogalla P, et al. Genomics, 2000 Jan 1. PMID 10766566
  2. Mapping and molecular characterization of five HMG1-related DNA sequences. Rogalla P, et al. Cytogenet Cell Genet, 1998. PMID 9925949

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • high-mobility group (nonhistone chromosomal) protein 1-like 3
  • high-mobility group box 1-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_000883.6 

    Range
    101..1263
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    230514924..230516086
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    230997984..230999146
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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