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CBF dehydration-responsive element-binding protein 1F [ Prunus mume (Japanese apricot) ]

Gene ID: 103337409, updated on 28-Dec-2023

Summary

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Gene symbol
CBF
Gene description
dehydration-responsive element-binding protein 1F
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Prunus mume
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Also known as
CBFe-1; CBFe-2
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Genomic context

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Location:
chromosome: LG7
Exon count:
1
Annotation release Status Assembly LG Location
101 current P.mume_V1.0 (GCF_000346735.1) LG7 NC_024132.1 (8104147..8104967)

Linkage Group LG7 - NC_024132.1Genomic Context describing neighboring genes Neighboring gene dehydration-responsive element-binding protein 1B-like Neighboring gene dehydration-responsive element-binding protein 1D-like Neighboring gene dehydration-responsive element-binding protein 1B-like Neighboring gene dehydration-responsive element-binding protein 1E-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024132.1 Chromosome LG7 Reference P.mume_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dehydration-responsive element-binding protein 1F
Names
CBF/DREB1-like protein e-1
CBF/DREB1-like protein e-2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001301005.1 → NP_001287934.1  dehydration-responsive element-binding protein 1F

    See identical proteins and their annotated locations for NP_001287934.1

    Status: PROVISIONAL

    Source sequence(s)
    JX846908
    UniProtKB/TrEMBL
    A0A0S2CWT7, K7Z1C0
    Conserved Domains (1) summary
    cd00018
    Location:59 → 118
    AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...

RefSeqs of Annotated Genomes: Prunus mume Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.mume_V1.0 Primary Assembly

Genomic

  1. NC_024132.1 Reference P.mume_V1.0 Primary Assembly

    Range
    8104147..8104967
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases