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P.mume_V1.0

Organism name:
Prunus mume (Japanese apricot)
Isolate:
4
BioSample:
SAMN02981503
BioProject:
PRJNA171605
Submitter:
BGI
Date:
2014/02/28
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000346735.1 (latest)
RefSeq assembly accession:
GCF_000346735.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome Pltd (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
AOHF01
Assembly method:
SOAPdenovo v. 1.05
Genome coverage:
180x
Sequencing technology:
Illumina Hiseq2000

IDs: 558518 [UID] 558518 [GenBank] 1078848 [RefSeq]

See Genome Information for Prunus mume

History (Show revision history)

Global statistics

Total sequence length234,030,239
Total ungapped length217,178,859
Gaps between scaffolds462
Number of scaffolds8,626
Scaffold N50636,887
Scaffold L50106
Number of contigs23,761
Contig N5032,274
Contig L501,962
Total number of chromosomes and plasmids9
Number of component sequences (WGS or clone)23,761

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000346745.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Linkage Group LG1CM001826.1=NC_024126.10
Linkage Group LG2CM001827.1=NC_024127.10
Linkage Group LG3CM001828.1=NC_024128.10
Linkage Group LG4CM001829.1=NC_024129.10
Linkage Group LG5CM001830.1=NC_024130.10
Linkage Group LG6CM001831.1=NC_024131.10
Linkage Group LG7CM001832.1=NC_024132.10
Linkage Group LG8CM001833.1=NC_024133.10
unplacedn/an/an/a8,155

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All233,872,5278,625217,021,147636,88715,135462
Linkage Group LG126,753,0246725,051,811689,5981,59566
Linkage Group LG242,086,7717939,496,332748,1442,54478
Linkage Group LG324,358,5216722,687,754624,5321,55966
Linkage Group LG423,934,0965022,612,557835,2111,40949
Linkage Group LG526,133,8907624,499,282603,6361,60775
Linkage Group LG621,292,2005719,961,963557,0011,33656
Linkage Group LG717,044,5133915,957,554797,33598538
Linkage Group LG817,249,3913516,348,992814,77696734
unplaced35,020,1218,15530,404,90294,6033,1330
MoleculeTotal
Length
Plastid Pltd157,712
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