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SPHK1 sphingosine kinase 1 [ Eptesicus fuscus (big brown bat) ]

Gene ID: 103298394, updated on 30-Mar-2024

Summary

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Gene symbol
SPHK1
Gene description
sphingosine kinase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Eptesicus fuscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Eptesicus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_03 current DD_ASM_mEF_20220401 (GCF_027574615.1) 20 NC_072492.1 (48987378..48994335)
101 previous assembly EptFus1.0 (GCF_000308155.1) Unplaced Scaffold NW_007370762.1 (2878275..2898686, complement)

Chromosome 20 - NC_072492.1Genomic Context describing neighboring genes Neighboring gene glutamine rich 2 Neighboring gene phosphoribosyl pyrophosphate synthetase associated protein 1 Neighboring gene uncharacterized LOC129147320 Neighboring gene ubiquitin conjugating enzyme E2 O Neighboring gene small Cajal body-specific RNA 14 Neighboring gene aralkylamine N-acetyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-erythro-sphingosine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to growth factor stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine kinase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027574615.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DD_ASM_mEF_20220401

Genomic

  1. NC_072492.1 Reference DD_ASM_mEF_20220401

    Range
    48987378..48994335
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054708941.1 → XP_054564916.1  sphingosine kinase 1 isoform X2

  2. XM_054708942.1 → XP_054564917.1  sphingosine kinase 1 isoform X3

  3. XM_008155179.3 → XP_008153401.3  sphingosine kinase 1 isoform X1

Nucleotide Protein
Heading Accession and Version

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