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LOC103191353 sodium-dependent lysophosphatidylcholine symporter 1 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103191353, updated on 11-Mar-2024

Summary

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Gene symbol
LOC103191353
Gene description
sodium-dependent lysophosphatidylcholine symporter 1
See related
Ensembl:ENSCMIG00000002698
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
zebrafish all
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Genomic context

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See LOC103191353 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704759.1 (221089..235204)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890865.1 (216..13335)

NW_024704759.1Genomic Context describing neighboring genes Neighboring gene protein FAM110A Neighboring gene NSFL1 (p97) cofactor (p47) Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP1A Neighboring gene syntaphilin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium-dependent lysophosphatidylcholine symporter 1
Names
major facilitator superfamily domain-containing protein 2A-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704759.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    221089..235204
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042341973.1 → XP_042197907.1  sodium-dependent lysophosphatidylcholine symporter 1 isoform X1

    UniProtKB/TrEMBL
    A0A4W3GNM0
    Conserved Domains (1) summary
    cl28910
    Location:39 → 491
    MFS; Major Facilitator Superfamily

  2. XM_042341974.1 → XP_042197908.1  sodium-dependent lysophosphatidylcholine symporter 1 isoform X2

    UniProtKB/TrEMBL
    A0A4W3GNM0
    Conserved Domains (1) summary
    cl28910
    Location:39 → 491
    MFS; Major Facilitator Superfamily

  3. XM_042341975.1 → XP_042197909.1  sodium-dependent lysophosphatidylcholine symporter 1 isoform X3

    UniProtKB/TrEMBL
    A0A4W3GNM0
    Conserved Domains (1) summary
    cl28910
    Location:1 → 422
    MFS; Major Facilitator Superfamily
Nucleotide Protein
Heading Accession and Version

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