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Callorhinchus_milii-6.1.3

Organism name:
Callorhinchus milii (elephant shark)
Isolate:
IMCB2004
Sex:
male
BioSample:
SAMN00000800
BioProject:
PRJNA18361
Submitter:
Institute of Molecular and Cell Biology, Singapore
Date:
2013/12/11
Synonyms:
calMil1
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000165045.2 (latest)
RefSeq assembly accession:
GCF_000165045.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
AAVX02
Assembly method:
Celera v. 6.1
Genome coverage:
19.25x
Sequencing technology:
454 Titanium; Sanger ABI 3730

IDs: 85971 [UID] 874878 [GenBank] 1011668 [RefSeq]

See Genome Information for Callorhinchus milii

History (Show revision history)

Comment

This is a de novo whole genome assembly of elephant shark (Callorhinchus milii), assembly name Callorhinchus_milii-6.1.3. The approximate average depth of coverage is 19.25X, with an estimated 1Gb genome size. These sequencing technologies were used: 454 Titanium, including shotgun, ... 3-kbp and 8-kbp paired-end; Sanger BAC ends, 35k fosmid and 3-4kb plasmid paired-end sequencing data sets. The approximate average depth of coverage for each data type is:
BES: 0.10X
35k fosmid: 1.38X
3-4kb plasmid: 0.02X
454 Fragment: 11.26X
454 3kbp: 4.00X
454 8kbp: 2.49X
The Institute of Molecular and Cell Biology (IMCB), Singapore contributed 1.4X 3730 sequence and the BAC end sequences.
Consortium:
The Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA
Institute of Molecular and Cell Biology (IMCB), Biopolis, Singapore 138673
J. Craig Venter Institute (JCVI), Rockville, MD 20850, USA
Submitting Organization: The Genome Institute, Washington University School of Medicine.  more

Global statistics

Total sequence length974,498,586
Total assembly gap length37,545,128
Gaps between scaffolds0
Number of scaffolds21,204
Scaffold N504,521,921
Scaffold L5060
Number of contigs67,421
Contig N5046,577
Contig L505,394
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)67,421

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PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced974,481,81721,203936,936,6894,521,92146,2170
MoleculeTotal
Length
Mitochondrion MT16,769
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