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galnt13 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103176411, updated on 11-Mar-2024

Summary

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Gene symbol
galnt13
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13
See related
Ensembl:ENSCMIG00000009537
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704747.1 (28190918..28309484)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890067.1 (2720486..2837784, complement)

NW_024704747.1Genomic Context describing neighboring genes Neighboring gene PRP40 pre-mRNA processing factor 40 homolog A Neighboring gene ADP-ribosylation factor-like 6 interacting protein 6 Neighboring gene potassium inwardly rectifying channel subfamily J member 3a Neighboring gene nuclear receptor subfamily 4, group A, member 2a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704747.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    28190918..28309484
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042336499.1 → XP_042192433.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X1

    UniProtKB/TrEMBL
    A0A4W3IJ92, A0A4W3IJC8
    Conserved Domains (2) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:431 → 558
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_007889922.2 → XP_007888113.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X1

    UniProtKB/TrEMBL
    A0A4W3IJ92, A0A4W3IJC8
    Related
    ENSCMIP00000020924.1
    Conserved Domains (2) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:431 → 558
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_007889923.2 → XP_007888114.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X2

    UniProtKB/TrEMBL
    A0A4W3IJB8, A0A4W3IJC8
    Related
    ENSCMIP00000020949.1
    Conserved Domains (3) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:431 → 550
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:431 → 548
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  4. XM_007889924.2 → XP_007888115.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X3

    See identical proteins and their annotated locations for XP_007888115.1

    UniProtKB/TrEMBL
    A0A4W3I189, V9KHL7
    Related
    ENSCMIP00000020929.1
    Conserved Domains (3) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:431 → 557
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:431 → 557
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  5. XM_007889925.2 → XP_007888116.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X4

    See identical proteins and their annotated locations for XP_007888116.1

    UniProtKB/TrEMBL
    A0A4W3I189, V9KEN3
    Related
    ENSCMIP00000020931.1
    Conserved Domains (3) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:431 → 547
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:431 → 547
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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