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ATOH8 atonal bHLH transcription factor 8 [ Physeter catodon (sperm whale) ]

Gene ID: 102983887, updated on 10-Mar-2024

Summary

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Gene symbol
ATOH8
Gene description
atonal bHLH transcription factor 8
See related
Ensembl:ENSPCTG00005005238
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 12 NC_041225.1 (10522928..10558540)
102 previous assembly ASM283717v2 (GCF_002837175.2) 12 NC_041225.1 (10522928..10558541)

Chromosome 12 - NC_041225.1Genomic Context describing neighboring genes Neighboring gene surfactant protein B Neighboring gene uncharacterized LOC114487396 Neighboring gene uncharacterized LOC114487395 Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 5 Neighboring gene BTB/POZ domain-containing protein 9-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor ATOH8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041225.1 Reference ASM283717v5 Primary Assembly

    Range
    10522928..10558540
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055088886.1 → XP_054944861.1  transcription factor ATOH8 isoform X5

    UniProtKB/TrEMBL
    A0A9W2X087

  2. XM_007104775.4 → XP_007104837.1  transcription factor ATOH8 isoform X4

    UniProtKB/TrEMBL
    A0A2Y9ELG9
    Related
    ENSPCTP00005007432.1, ENSPCTT00005008173.1
    Conserved Domains (1) summary
    cd00083
    Location:227 → 281
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

  3. XM_028497023.2 → XP_028352824.1  transcription factor ATOH8 isoform X1

    UniProtKB/TrEMBL
    A0A455BV08
    Conserved Domains (2) summary
    PRK07764
    Location:47 → 181
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam00010
    Location:227 → 278
    HLH; Helix-loop-helix DNA-binding domain

  4. XM_028497024.2 → XP_028352825.1  transcription factor ATOH8 isoform X1

    UniProtKB/TrEMBL
    A0A455BV08
    Conserved Domains (2) summary
    PRK07764
    Location:47 → 181
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam00010
    Location:227 → 278
    HLH; Helix-loop-helix DNA-binding domain

  5. XM_028497026.2 → XP_028352827.1  transcription factor ATOH8 isoform X3

    UniProtKB/TrEMBL
    A0A455BVN2
    Conserved Domains (2) summary
    PRK07764
    Location:47 → 181
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam00010
    Location:227 → 278
    HLH; Helix-loop-helix DNA-binding domain

  6. XM_028497025.2 → XP_028352826.1  transcription factor ATOH8 isoform X2

    UniProtKB/TrEMBL
    A0A455C905
    Conserved Domains (2) summary
    PRK07764
    Location:47 → 181
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam00010
    Location:227 → 278
    HLH; Helix-loop-helix DNA-binding domain
Nucleotide Protein
Heading Accession and Version

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