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EFTUD2 elongation factor Tu GTP binding domain containing 2 [ Panthera tigris (tiger) ]

Gene ID: 102956514, updated on 10-Mar-2024

Summary

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Gene symbol
EFTUD2
Gene description
elongation factor Tu GTP binding domain containing 2
See related
Ensembl:ENSPTIG00000007703
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: E1
Exon count:
28
Annotation release Status Assembly Chr Location
102 current P.tigris_Pti1_mat1.1 (GCF_018350195.1) E1 NC_056673.1 (42516209..42555633, complement)

Chromosome E1 - NC_056673.1Genomic Context describing neighboring genes Neighboring gene gap junction protein gamma 1 Neighboring gene HIG1 hypoxia inducible domain family member 1B Neighboring gene coiled-coil domain containing 103 Neighboring gene family with sequence similarity 187 member A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056673.1 Chromosome E1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables U5 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2-type catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
116 kDa U5 small nuclear ribonucleoprotein component

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panthera tigris Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.tigris_Pti1_mat1.1 Primary Assembly

Genomic

  1. NC_056673.1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

    Range
    42516209..42555633 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007093828.3 → XP_007093890.1  116 kDa U5 small nuclear ribonucleoprotein component

    See identical proteins and their annotated locations for XP_007093890.1

    UniProtKB/TrEMBL
    A0A8C9M3F2
    Related
    ENSPTIP00000005543.1
    Conserved Domains (2) summary
    cl30786
    Location:122 → 954
    FusA; Translation elongation factor EF-G, a GTPase [Translation, ribosomal structure and biogenesis]
    pfam16004
    Location:4 → 110
    EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component N-terminus
Nucleotide Protein
Heading Accession and Version

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