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LOC102712362 glutamine--tRNA ligase-like [ Oryza brachyantha (malo sina) ]

Gene ID: 102712362, updated on 7-Dec-2023

Summary

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Gene symbol
LOC102712362
Gene description
glutamine--tRNA ligase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza brachyantha
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Genomic context

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See LOC102712362 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
22
Annotation release Status Assembly Chr Location
102 current ObraRS2 (GCF_000231095.2) 5 NC_023167.2 (3535050..3540061, complement)
101 previous assembly Oryza_brachyantha.v1.4b (GCF_000231095.1) 5 NC_023167.1 (3585564..3590573, complement)

Chromosome 5 - NC_023167.2Genomic Context describing neighboring genes Neighboring gene FACT complex subunit SSRP1-B Neighboring gene uncharacterized LOC102713358 Neighboring gene uncharacterized LOC102713629 Neighboring gene probable WRKY transcription factor 51

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glutamine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glutaminyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glutamine--tRNA ligase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza brachyantha Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ObraRS2 Primary Assembly

Genomic

  1. NC_023167.2 Reference ObraRS2 Primary Assembly

    Range
    3535050..3540061 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006654999.3 → XP_006655062.1  glutamine--tRNA ligase-like

    UniProtKB/TrEMBL
    J3M4K2
    Conserved Domains (5) summary
    PLN02859
    Location:11 → 799
    PLN02859; glutamine-tRNA ligase
    pfam03950
    Location:583 → 774
    tRNA-synt_1c_C; tRNA synthetases class I (E and Q), anti-codon binding domain
    pfam04557
    Location:177 → 268
    tRNA_synt_1c_R2; Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2
    pfam04558
    Location:22 → 174
    tRNA_synt_1c_R1; Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1
    cl00015
    Location:275 → 580
    nt_trans; nucleotidyl transferase superfamily
Nucleotide Protein
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