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Taxonomy browser (Oryza brachyantha)

Oryza brachyantha

Taxonomy ID: 4533 (for references in articles please use NCBI:txid4533)
Scientific name: Oryza brachyantha A.Chev. & Roehr.
Genbank common name: malo sina
Inherited blast name: monocots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
   Entrez records   
Database name Direct links
Nucleotide 35,080
Nucleotide GSS 70,741
Protein 27,682
Genome 1
Popset 174
GEO Datasets 2
PubMed Central 154
Gene 26,283
SRA Experiments 36
Identical Protein Groups 25,061
Bio Project 6
Bio Sample 25
Bio Systems 255
Assembly 3
Clone DB 35,113
Probe 123
Taxonomy 1

Comments and References:

Nota BeneGRIN (Aug 07, 2012)
Name accessed on 7 August 2012 in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland.

Nota BeneTROPICOS (Aug 27, 2015)
Name accessed on 27 August 2015 in: Tropicos.org. Missouri Botanical Garden, 2008 - 4344 Shaw Boulevard, Saint Louis, Missouri 63110, U.S.A. on line at: http://www.tropicos.org/

Nota BeneGRIN (Oct 18, 2016)
Name accessed on 18 October 2016 in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland.


Genome Information

Go to NCBI genomic BLAST page for Oryza brachyantha
Genome view: 12 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 11 12
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
CLONEEND ALL
AGI - Arizona Genomics Institute
67,364 67,364
TIGR - The Institute for Genome Research
174 174
Totals per type
67,538 67,538

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
2 records from this provider organism-specific Genomes On Line Database
Oryza brachyantha taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Oryza brachyantha taxonomy/phylogenetic The International Plant Names Index
Oryza brachyantha A. Chev. & Roehr. taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Oryza brachyantha organism-specific WebScipio - eukaryotic gene identification
diArk: Oryza brachyantha organism-specific diArk - a resource for eukaryotic genome research
Oryza brachyantha taxonomy/phylogenetic electronic Plant Information Centre
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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