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trmt9b tRNA methyltransferase 9B [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102698195, updated on 10-Mar-2024

Summary

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Gene symbol
trmt9b
Gene description
tRNA methyltransferase 9B
See related
Ensembl:ENSLOCG00000008334
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Also known as
kiaa1456
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG3
Exon count:
4
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG3 NC_023181.1 (13685306..13705333, complement)

Linkage Group LG3 - NC_023181.1Genomic Context describing neighboring genes Neighboring gene histone deacetylase 12 Neighboring gene replication factor C (activator 1) 3 Neighboring gene neurobeachin a Neighboring gene mab-21-like 1 Neighboring gene doublecortin-like kinase 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023181.1 Chromosome LG3 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S-adenosylmethionine-dependent methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA wobble uridine modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable tRNA methyltransferase 9-like protein
Names
tRNA methyltransferase 9B (putative)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023181.1 Reference LepOcu1 Primary Assembly

    Range
    13685306..13705333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015341811.1 → XP_015197297.1  probable tRNA methyltransferase 9-like protein

    UniProtKB/TrEMBL
    W5MP12, W5MP25
    Related
    ENSLOCP00000010121.1, ENSLOCT00000010133.1
    Conserved Domains (1) summary
    pfam08241
    Location:50 → 139
    Methyltransf_11; Methyltransferase domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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