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rps4x ribosomal protein S4 X-linked [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102694550, updated on 10-Mar-2024

Summary

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Gene symbol
rps4x
Gene description
ribosomal protein S4 X-linked
See related
Ensembl:ENSLOCG00000014445
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG7
Exon count:
7
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG7 NC_023185.1 (37850632..37856585, complement)

Linkage Group LG7 - NC_023185.1Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 36 Neighboring gene NHS-like 2 Neighboring gene Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 Neighboring gene histone deacetylase 8 Neighboring gene phosphorylase kinase, alpha 1a (muscle)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023185.1 Chromosome LG7 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
40S ribosomal protein S4, X isoform

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023185.1 Reference LepOcu1 Primary Assembly

    Range
    37850632..37856585 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015351334.1 → XP_015206820.1  40S ribosomal protein S4, X isoform

    UniProtKB/TrEMBL
    W5NAX0
    Related
    ENSLOCP00000017779.1, ENSLOCT00000017811.1
    Conserved Domains (5) summary
    PLN00036
    Location:1 → 260
    PLN00036; 40S ribosomal protein S4; Provisional
    cd06087
    Location:175 → 229
    KOW_RPS4; KOW motif of Ribosomal Protein S4 (RPS4)
    pfam00900
    Location:95 → 169
    Ribosomal_S4e; Ribosomal family S4e
    pfam08071
    Location:3 → 39
    RS4NT; RS4NT (NUC023) domain
    pfam16121
    Location:212 → 259
    40S_S4_C; 40S ribosomal protein S4 C-terminus
Nucleotide Protein
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