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rps4x ribosomal protein S4 X-linked [ Danio rerio (zebrafish) ]

Gene ID: 449547, updated on 24-Apr-2022

Summary

Official Symbol
rps4xprovided by ZNC
Official Full Name
ribosomal protein S4 X-linkedprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040927-19
See related
Ensembl:ENSDARG00000014690 AllianceGenome:ZFIN:ZDB-GENE-040927-19
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:92076; wu:fa91h09
Summary
Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within brain development and chordate embryonic development. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to several human genes including RPS4X (ribosomal protein S4 X-linked). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See rps4x in Genome Data Viewer
Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (51633815..51639640, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (51358745..51364570, complement)
103 previous assembly Zv9 (GCF_000002035.4) 7 NC_007118.5 (53088995..53094820, complement)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 36 Neighboring gene NHS-like 2 Neighboring gene Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 Neighboring gene histone deacetylase 8

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
 
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within brain development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within chordate embryonic development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in translation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
40S ribosomal protein S4, X isoform

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001005589.1NP_001005589.1  40S ribosomal protein S4, X isoform

    See identical proteins and their annotated locations for NP_001005589.1

    Status: PROVISIONAL

    Source sequence(s)
    BC081584
    UniProtKB/Swiss-Prot
    Q642H9
    Related
    ENSDARP00000108089.2, ENSDART00000128917.3
    Conserved Domains (5) summary
    PLN00036
    Location:1260
    PLN00036; 40S ribosomal protein S4; Provisional
    cd06087
    Location:175229
    KOW_RPS4; KOW motif of Ribosomal Protein S4 (RPS4)
    pfam00900
    Location:95169
    Ribosomal_S4e; Ribosomal family S4e
    pfam08071
    Location:339
    RS4NT; RS4NT (NUC023) domain
    pfam16121
    Location:212259
    40S_S4_C; 40S ribosomal protein S4 C-terminus

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    51633815..51639640 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)