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LOC102602925 2-dehydro-3-deoxyphosphooctonate aldolase 1 [ Solanum tuberosum (potato) ]

Gene ID: 102602925, updated on 2-Nov-2023

Summary

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Gene symbol
LOC102602925
Gene description
2-dehydro-3-deoxyphosphooctonate aldolase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239452.1 (82671..88366)

NW_006239452.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102602586 Neighboring gene uncharacterized LOC102605845 Neighboring gene uncharacterized LOC102606181 Neighboring gene phototropin-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006239452.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-deoxy-8-phosphooctulonate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monosaccharide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
2-dehydro-3-deoxyphosphooctonate aldolase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239452.1 Reference SolTub_3.0 Primary Assembly

    Range
    82671..88366
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006365086.2 → XP_006365148.1  2-dehydro-3-deoxyphosphooctonate aldolase 1 isoform X1

    UniProtKB/TrEMBL
    M1CDM7
    Conserved Domains (1) summary
    PLN03033
    Location:1 → 290
    PLN03033; 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

  2. XM_015304312.1 → XP_015159798.1  2-dehydro-3-deoxyphosphooctonate aldolase 1 isoform X2

    UniProtKB/TrEMBL
    M1CDM8
    Conserved Domains (1) summary
    cl17225
    Location:1 → 270
    DAHP_synth_1; DAHP synthetase I family
Nucleotide Protein
Heading Accession and Version

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