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SolTub_3.0

Organism name:
Solanum tuberosum (potato)
Infraspecific name:
Cultivar: DM 1-3 516 R44
BioSample:
SAMN02981305
BioProject:
PRJNA63145
Submitter:
Potato Genome Sequencing Consortium
Date:
2011/09/19
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000226075.1 (latest)
RefSeq assembly accession:
GCF_000226075.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome Pltd (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
AEWC01
Assembly method:
SOAPdenovo v. 1014
Genome coverage:
114X
Sequencing technology:
Illumina GA2

IDs: 304118 [UID] 304118 [GenBank] 871538 [RefSeq]

See Genome Information for Solanum tuberosum

There are 26 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length705,934,411
Total ungapped length663,289,804
Gaps between scaffolds0
Number of scaffolds14,854
Scaffold N501,344,915
Scaffold L50160
Number of contigs60,069
Contig N5031,933
Contig L506,190
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)60,069

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced705,779,11514,853663,134,5081,344,91545,2150
MoleculeTotal
Length
Chloroplast Pltd155,296
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