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LOC102577517 3'-5'-exoribonuclease/RNA binding protein-like protein [ Solanum tuberosum (potato) ]

Gene ID: 102577517, updated on 11-Apr-2024

Summary

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Gene symbol
LOC102577517
Gene description
3'-5'-exoribonuclease/RNA binding protein-like protein
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Genomic context

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See LOC102577517 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239057.1 (954732..961125)

NW_006239057.1Genomic Context describing neighboring genes Neighboring gene villin-2 Neighboring gene cytoplasmic tRNA 2-thiolation protein 2 Neighboring gene uncharacterized LOC102588805 Neighboring gene cycloartenol-C-24-methyltransferase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006239057.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in TRAMP-dependent tRNA surveillance pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U1 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U4 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U5 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear mRNA surveillance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
3'-5'-exoribonuclease/RNA binding protein-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001288144.1 → NP_001275073.1  3'-5'-exoribonuclease/RNA binding protein-like protein

    See identical proteins and their annotated locations for NP_001275073.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ294254
    UniProtKB/TrEMBL
    M1AC20, Q2PYZ2
    Conserved Domains (2) summary
    cd11369
    Location:20 → 293
    RNase_PH_RRP43; RRP43 subunit of eukaryotic exosome
    COG2123
    Location:34 → 298
    Rrp42; Exosome complex RNA-binding protein Rrp42, RNase PH superfamily [Translation, ribosomal structure and biogenesis]

RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239057.1 Reference SolTub_3.0 Primary Assembly

    Range
    954732..961125
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006351252.2 → XP_006351314.1  3'-5'-exoribonuclease/RNA binding protein-like protein isoform X1

    UniProtKB/TrEMBL
    M1AC20, M1C6U1
    Conserved Domains (2) summary
    cd11369
    Location:20 → 293
    RNase_PH_RRP43; RRP43 subunit of eukaryotic exosome
    COG2123
    Location:34 → 298
    Rrp42; Exosome complex RNA-binding protein Rrp42, RNase PH superfamily [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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