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PDS5B PDS5 cohesin associated factor B [ Myotis brandtii (Brandt's bat) ]

Gene ID: 102258403, updated on 30-Mar-2024

Summary

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Gene symbol
PDS5B
Gene description
PDS5 cohesin associated factor B
Locus tag
D623_10026616
Gene type
protein coding
RefSeq status
MODEL
Organism
Myotis brandtii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Myotis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
40
Annotation release Status Assembly Chr Location
101 current ASM41265v1 (GCF_000412655.1) Unplaced Scaffold NW_005371082.1 (232305..479733)

NW_005371082.1Genomic Context describing neighboring genes Neighboring gene succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial-like Neighboring gene 28S ribosomal protein S21, mitochondrial pseudogene Neighboring gene sarcoglycan gamma Neighboring gene uncharacterized LOC106724224 Neighboring gene klotho

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005371082.1 Unplaced Scaffold Reference ASM41265v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome analysis reveals insights into physiology and longevity of the Brandt's bat Myotis brandtii. Seim I, et al. Nat Commun, 2013. PMID 23962925, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic sister chromatid cohesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sister chromatid cohesion protein PDS5 homolog B
Names
PDS5, regulator of cohesion maintenance, homolog B
Sister chromatid cohesion protein PDS5 like protein B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myotis brandtii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM41265v1

Genomic

  1. NW_005371082.1 Reference ASM41265v1

    Range
    232305..479733
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014530742.1 → XP_014386228.1  sister chromatid cohesion protein PDS5 homolog B isoform X6

    UniProtKB/TrEMBL
    S7NL98
    Conserved Domains (3) summary
    PRK05667
    Location:250 → 461
    dnaG; DNA primase; Validated
    pfam05793
    Location:1175 → 1405
    TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]

  2. XM_014530741.1 → XP_014386227.1  sister chromatid cohesion protein PDS5 homolog B isoform X3

    UniProtKB/TrEMBL
    S7NL98
    Conserved Domains (3) summary
    PRK05667
    Location:258 → 469
    dnaG; DNA primase; Validated
    pfam05793
    Location:1183 → 1413
    TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
    sd00044
    Location:248 → 269
    HEAT; HEAT repeat [structural motif]

  3. XM_014530748.1 → XP_014386234.1  sister chromatid cohesion protein PDS5 homolog B isoform X13

    Conserved Domains (2) summary
    PRK05667
    Location:259 → 470
    dnaG; DNA primase; Validated
    sd00044
    Location:249 → 270
    HEAT; HEAT repeat [structural motif]

  4. XM_005883135.2 → XP_005883197.2  sister chromatid cohesion protein PDS5 homolog B isoform X1

    UniProtKB/TrEMBL
    S7NL98
    Conserved Domains (3) summary
    PRK05667
    Location:259 → 470
    dnaG; DNA primase; Validated
    pfam05793
    Location:1184 → 1414
    TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
    sd00044
    Location:249 → 270
    HEAT; HEAT repeat [structural motif]

  5. XM_005883136.2 → XP_005883198.2  sister chromatid cohesion protein PDS5 homolog B isoform X2

    UniProtKB/TrEMBL
    S7NL98
    Conserved Domains (2) summary
    pfam16001
    Location:1177 → 1421
    DUF4775; Domain of unknown function (DUF4775)
    sd00044
    Location:249 → 270
    HEAT; HEAT repeat [structural motif]

  6. XM_005883139.2 → XP_005883201.2  sister chromatid cohesion protein PDS5 homolog B isoform X8

    UniProtKB/TrEMBL
    S7NL98
    Conserved Domains (2) summary
    PRK05667
    Location:259 → 470
    dnaG; DNA primase; Validated
    sd00044
    Location:249 → 270
    HEAT; HEAT repeat [structural motif]

  7. XM_005883137.2 → XP_005883199.2  sister chromatid cohesion protein PDS5 homolog B isoform X4

    UniProtKB/TrEMBL
    S7NL98
    Conserved Domains (3) summary
    PRK05667
    Location:259 → 470
    dnaG; DNA primase; Validated
    pfam07263
    Location:1180 → 1418
    DMP1; Dentin matrix protein 1 (DMP1)
    sd00044
    Location:249 → 270
    HEAT; HEAT repeat [structural motif]

  8. XM_005883138.2 → XP_005883200.2  sister chromatid cohesion protein PDS5 homolog B isoform X5

    UniProtKB/TrEMBL
    S7NL98
    Conserved Domains (2) summary
    pfam16001
    Location:1177 → 1419
    DUF4775; Domain of unknown function (DUF4775)
    sd00044
    Location:249 → 270
    HEAT; HEAT repeat [structural motif]

  9. XM_014530743.1 → XP_014386229.1  sister chromatid cohesion protein PDS5 homolog B isoform X7

    UniProtKB/TrEMBL
    S7NL98
    Conserved Domains (3) summary
    PRK05667
    Location:259 → 470
    dnaG; DNA primase; Validated
    pfam05793
    Location:1163 → 1393
    TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
    sd00044
    Location:249 → 270
    HEAT; HEAT repeat [structural motif]

  10. XM_014530744.1 → XP_014386230.1  sister chromatid cohesion protein PDS5 homolog B isoform X9

    UniProtKB/TrEMBL
    S7NL98
    Conserved Domains (2) summary
    PRK05667
    Location:259 → 470
    dnaG; DNA primase; Validated
    sd00044
    Location:249 → 270
    HEAT; HEAT repeat [structural motif]

  11. XM_014530745.1 → XP_014386231.1  sister chromatid cohesion protein PDS5 homolog B isoform X10

    UniProtKB/TrEMBL
    S7NL98
    Conserved Domains (2) summary
    PRK05667
    Location:259 → 470
    dnaG; DNA primase; Validated
    sd00044
    Location:249 → 270
    HEAT; HEAT repeat [structural motif]

  12. XM_014530746.1 → XP_014386232.1  sister chromatid cohesion protein PDS5 homolog B isoform X11

    UniProtKB/TrEMBL
    S7NL98
    Conserved Domains (3) summary
    PRK05667
    Location:143 → 354
    dnaG; DNA primase; Validated
    pfam05793
    Location:1068 → 1298
    TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
    sd00044
    Location:133 → 154
    HEAT; HEAT repeat [structural motif]

  13. XM_014530747.1 → XP_014386233.1  sister chromatid cohesion protein PDS5 homolog B isoform X12

    UniProtKB/TrEMBL
    S7NL98
    Conserved Domains (3) summary
    PTZ00121
    Location:1022 → 1238
    PTZ00121; MAEBL; Provisional
    PRK05667
    Location:76 → 287
    dnaG; DNA primase; Validated
    sd00044
    Location:66 → 87
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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