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Gadd45gip1 growth arrest and DNA-damage-inducible, gamma interacting protein 1 [ Mus musculus (house mouse) ]

Gene ID: 102060, updated on 2-Nov-2024

Summary

Official Symbol
Gadd45gip1provided by MGI
Official Full Name
growth arrest and DNA-damage-inducible, gamma interacting protein 1provided by MGI
Primary source
MGI:MGI:1914947
See related
Ensembl:ENSMUSG00000033751 AllianceGenome:MGI:1914947
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Crif1; Plinp1; MRP-L59; 2310040G17Rik
Summary
Located in mitochondrion. Is expressed in several structures, including brain; early conceptus; intestine epithelium; and secondary oocyte. Used to study type 2 diabetes mellitus. Orthologous to human GADD45GIP1 (GADD45G interacting protein 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in adrenal adult (RPKM 129.2), ovary adult (RPKM 87.8) and 28 other tissues See more
Orthologs
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Genomic context

See Gadd45gip1 in Genome Data Viewer
Location:
8 C3; 8 41.19 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (85558911..85562111)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (84832282..84835482)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA G430095P16 gene Neighboring gene nuclear factor I/X Neighboring gene VISTA enhancer mm21 Neighboring gene VISTA enhancer mm1615 Neighboring gene STARR-seq mESC enhancer starr_22139 Neighboring gene DAN domain family member 5, BMP antagonist Neighboring gene STARR-positive B cell enhancer ABC_E5027 Neighboring gene RIKEN cDNA 1700122E12 gene Neighboring gene STARR-positive B cell enhancer ABC_E564 Neighboring gene RAD23 homolog A, nucleotide excision repair protein Neighboring gene calreticulin Neighboring gene predicted gene 5911

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (2)  1 citation

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in mitochondrial translation NAS
Non-traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
located_in mitochondrial inner membrane NAS
Non-traceable Author Statement
more info
PubMed 
part_of mitochondrial large ribosomal subunit NAS
Non-traceable Author Statement
more info
PubMed 
located_in mitochondrion HDA PubMed 
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
large ribosomal subunit protein mL64
Names
39S ribosomal protein L59, mitochondrial
growth arrest and DNA damage-inducible proteins-interacting protein 1
papillomavirus L2 interacting nuclear protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_183358.4NP_899202.3  large ribosomal subunit protein mL64

    See identical proteins and their annotated locations for NP_899202.3

    Status: VALIDATED

    Source sequence(s)
    AK002738, AK028227
    Consensus CDS
    CCDS22478.1
    UniProtKB/Swiss-Prot
    Q8BT05, Q9CR59
    Related
    ENSMUSP00000037783.6, ENSMUST00000036734.6
    Conserved Domains (1) summary
    pfam10147
    Location:42211
    CR6_interact; Growth arrest and DNA-damage-inducible proteins-interacting protein 1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    85558911..85562111
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)