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Ddx4 DEAD-box helicase 4 [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102015061, updated on 10-Mar-2024

Summary

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Gene symbol
Ddx4
Gene description
DEAD-box helicase 4
See related
Ensembl:ENSCLAG00000005386
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955446.1 (11967222..12025537, complement)

NW_004955446.1Genomic Context describing neighboring genes Neighboring gene interleukin 6 cytokine family signal transducer Neighboring gene uncharacterized LOC106149471 Neighboring gene interleukin 31 receptor A Neighboring gene solute carrier family 38 member 9 Neighboring gene nucleolar protein 58 pseudogene Neighboring gene uncharacterized LOC106149461

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004955446.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in gamete generation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955446.1 Reference ChiLan1.0 Primary Assembly

    Range
    11967222..12025537 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005392694.1 → XP_005392751.1  probable ATP-dependent RNA helicase DDX4 isoform X2

    UniProtKB/TrEMBL
    A0A8C2YLL6
    Conserved Domains (3) summary
    smart00487
    Location:259 → 462
    DEXDc; DEAD-like helicases superfamily
    cd00079
    Location:470 → 599
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd00268
    Location:246 → 459
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...

  2. XM_005392693.1 → XP_005392750.1  probable ATP-dependent RNA helicase DDX4 isoform X1

    UniProtKB/TrEMBL
    A0A8C2YLL6
    Related
    ENSCLAP00000007679.1, ENSCLAT00000007798.1
    Conserved Domains (3) summary
    smart00487
    Location:275 → 478
    DEXDc; DEAD-like helicases superfamily
    cd00079
    Location:486 → 615
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd00268
    Location:262 → 475
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
Nucleotide Protein
Heading Accession and Version

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