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Rad51d RAD51 paralog D [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101969774, updated on 8-Mar-2024

Summary

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Gene symbol
Rad51d
Gene description
RAD51 paralog D
Locus tag
H1C71_022389
See related
EnsemblRapid:ENSSTOG00015016028
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405602.1 (37241407..37254875)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936538.1 (119409..132830)

NW_024405602.1Genomic Context describing neighboring genes Neighboring gene notchless homolog 1 Neighboring gene fibronectin type III domain containing 8 Neighboring gene ring finger and FYVE like domain containing E3 ubiquitin protein ligase Neighboring gene uncharacterized LOC120884151 Neighboring gene DNA ligase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent DNA damage sensor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables four-way junction DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA strand invasion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in reciprocal meiotic recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in telomere maintenance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Rad51B-Rad51C-Rad51D-XRCC2 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in replication fork IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA repair protein RAD51 homolog 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405602.1 Reference HiC_Itri_2 Primary Assembly

    Range
    37241407..37254875
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040269131.1 → XP_040125065.1  DNA repair protein RAD51 homolog 4 isoform X1

    UniProtKB/TrEMBL
    I3NDA6
    Conserved Domains (1) summary
    TIGR02236
    Location:10 → 326
    recomb_radA; DNA repair and recombination protein RadA

  2. XM_005327759.4 → XP_005327816.1  DNA repair protein RAD51 homolog 4 isoform X2

    UniProtKB/TrEMBL
    A0A287D3P6, I3M7C0
    Related
    ENSSTOP00015019673.1, ENSSTOT00015021540.1
    Conserved Domains (1) summary
    cd19489
    Location:94 → 299
    Rad51D; RAD51D recombinase

RNA

  1. XR_005726420.1 RNA Sequence

  2. XR_005726419.1 RNA Sequence

  3. XR_005726421.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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