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Ca5a carbonic anhydrase 5A [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101969047, updated on 8-Mar-2024

Summary

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Gene symbol
Ca5a
Gene description
carbonic anhydrase 5A
Locus tag
H1C71_039817
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024409349.1 (25719672..25742042)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936641.1 (1478285..1495490)

NW_024409349.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120888159 Neighboring gene BTG3 associated nuclear protein Neighboring gene solute carrier family 7 member 5 Neighboring gene uncharacterized LOC120887998

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbonate dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbonic anhydrase 5A, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024409349.1 Reference HiC_Itri_2 Primary Assembly

    Range
    25719672..25742042
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040280176.1 → XP_040136110.1  carbonic anhydrase 5A, mitochondrial

    UniProtKB/TrEMBL
    A0A287DDA0
    Conserved Domains (1) summary
    cl00012
    Location:60 → 295
    alpha_CA; Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon ...

  2. XM_040280177.1 → XP_040136111.1  carbonic anhydrase 5A, mitochondrial

    UniProtKB/TrEMBL
    A0A287DDA0
    Conserved Domains (1) summary
    cl00012
    Location:60 → 295
    alpha_CA; Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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