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Fcn3 ficolin 3 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101961095, updated on 8-Mar-2024

Summary

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Gene symbol
Fcn3
Gene description
ficolin 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human all
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Genomic context

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See Fcn3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405058.1 (45855319..45861098, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936474.1 (11680166..11685214, complement)

NW_024405058.1Genomic Context describing neighboring genes Neighboring gene synaptotagmin like 1 Neighboring gene mitogen-activated protein kinase kinase kinase 6 Neighboring gene CD164 molecule like 2 Neighboring gene G protein-coupled receptor 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: ficolin-3
Names
ficolin (collagen/fibrinogen domain containing) 3 (Hakata antigen)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405058.1 Reference HiC_Itri_2 Primary Assembly

    Range
    45855319..45861098 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040289165.1 → XP_040145099.1  LOW QUALITY PROTEIN: ficolin-3

    Conserved Domains (1) summary
    cl00085
    Location:85 → 243
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
Nucleotide Protein
Heading Accession and Version

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