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Uba52 ubiquitin A-52 residue ribosomal protein fusion product 1 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101960597, updated on 8-Mar-2024

Summary

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Gene symbol
Uba52
Gene description
ubiquitin A-52 residue ribosomal protein fusion product 1
Locus tag
H1C71_006908
See related
EnsemblRapid:ENSSTOG00015022351
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405118.1 (203157851..203160864, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936596.1 (2706990..2709957, complement)

NW_024405118.1Genomic Context describing neighboring genes Neighboring gene cytokine receptor like factor 1 Neighboring gene required for excision 1-B domain containing Neighboring gene uncharacterized LOC120891488 Neighboring gene KxDL motif containing 1 Neighboring gene FKBP prolyl isomerase 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tag activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in modification-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-60S ribosomal protein L40

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405118.1 Reference HiC_Itri_2 Primary Assembly

    Range
    203157851..203160864 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005332988.4 → XP_005333045.1  ubiquitin-60S ribosomal protein L40

    See identical proteins and their annotated locations for XP_005333045.1

    UniProtKB/TrEMBL
    A0A287DC17
    Conserved Domains (2) summary
    cd01803
    Location:1 → 76
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
    pfam01020
    Location:79 → 126
    Ribosomal_L40e; Ribosomal L40e family

  2. XM_005332987.3 → XP_005333044.1  ubiquitin-60S ribosomal protein L40

    See identical proteins and their annotated locations for XP_005333044.1

    UniProtKB/TrEMBL
    A0A287DC17
    Conserved Domains (2) summary
    cd01803
    Location:1 → 76
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
    pfam01020
    Location:79 → 126
    Ribosomal_L40e; Ribosomal L40e family

  3. XM_005332990.4 → XP_005333047.1  ubiquitin-60S ribosomal protein L40

    See identical proteins and their annotated locations for XP_005333047.1

    UniProtKB/TrEMBL
    A0A287DC17
    Conserved Domains (2) summary
    cd01803
    Location:1 → 76
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
    pfam01020
    Location:79 → 126
    Ribosomal_L40e; Ribosomal L40e family

  4. XM_005332991.4 → XP_005333048.1  ubiquitin-60S ribosomal protein L40

    See identical proteins and their annotated locations for XP_005333048.1

    UniProtKB/TrEMBL
    A0A287DC17
    Related
    ENSSTOP00015027622.1, ENSSTOT00015030017.1
    Conserved Domains (2) summary
    cd01803
    Location:1 → 76
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
    pfam01020
    Location:79 → 126
    Ribosomal_L40e; Ribosomal L40e family
Nucleotide Protein
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