U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Mef2a myocyte enhancer factor 2A [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101959396, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Mef2a
Gene description
myocyte enhancer factor 2A
Locus tag
H1C71_017620
See related
EnsemblRapid:ENSSTOG00015009073
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024408640.1 (142352128..142499799)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936483.1 (3837891..3982334, complement)

NW_024408640.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 23 Neighboring gene leucine rich repeat containing 28 Neighboring gene U6atac minor spliceosomal RNA Neighboring gene LysM domain containing 4 Neighboring gene high mobility group protein B1-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Expression of myocyte enhancer factor-2 and downstream genes in ground squirrel skeletal muscle during hibernation. Tessier SN, et al. Mol Cell Biochem, 2010 Nov. PMID 20617369
  2. Myocyte enhancer factor-2 and cardiac muscle gene expression during hibernation in thirteen-lined ground squirrels. Tessier SN, et al. Gene, 2012 Jun 10. PMID 22513076

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone deacetylase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
myocyte-specific enhancer factor 2A

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024408640.1 Reference HiC_Itri_2 Primary Assembly

    Range
    142352128..142499799
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021722865.2 → XP_021578540.1  myocyte-specific enhancer factor 2A isoform X1

    UniProtKB/TrEMBL
    A0A287D4C1
    Conserved Domains (3) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam05109
    Location:129 → 380
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam12347
    Location:97 → 151
    HJURP_C; Holliday junction regulator protein family C-terminal repeat

  2. XM_005320089.4 → XP_005320146.1  myocyte-specific enhancer factor 2A isoform X1

    UniProtKB/TrEMBL
    A0A287D4C1
    Conserved Domains (3) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam05109
    Location:129 → 380
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam12347
    Location:97 → 151
    HJURP_C; Holliday junction regulator protein family C-terminal repeat

  3. XM_040275970.1 → XP_040131904.1  myocyte-specific enhancer factor 2A isoform X3

    UniProtKB/TrEMBL
    A0A287D0G7, A0A287D4C1
    Related
    ENSSTOP00015011216.1, ENSSTOT00015012303.1
    Conserved Domains (3) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam05109
    Location:129 → 372
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam12347
    Location:97 → 151
    HJURP_C; Holliday junction regulator protein family C-terminal repeat

  4. XM_040275969.1 → XP_040131903.1  myocyte-specific enhancer factor 2A isoform X2

    UniProtKB/TrEMBL
    A0A287CUU1, A0A287D4C1
    Related
    ENSSTOP00015011212.1, ENSSTOT00015012299.1
    Conserved Domains (3) summary
    COG5068
    Location:1 → 235
    ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam05109
    Location:125 → 378
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  5. XM_040275971.1 → XP_040131905.1  myocyte-specific enhancer factor 2A isoform X4

    UniProtKB/TrEMBL
    A0A287D4C1, I3NFW4
    Conserved Domains (3) summary
    COG5068
    Location:1 → 235
    ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam05109
    Location:125 → 370
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  6. XM_021722864.2 → XP_021578539.1  myocyte-specific enhancer factor 2A isoform X1

    UniProtKB/TrEMBL
    A0A287D4C1
    Conserved Domains (3) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam05109
    Location:129 → 380
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam12347
    Location:97 → 151
    HJURP_C; Holliday junction regulator protein family C-terminal repeat

  7. XM_021722869.2 → XP_021578544.1  myocyte-specific enhancer factor 2A isoform X5

    UniProtKB/TrEMBL
    A0A287D4C1
    Conserved Domains (1) summary
    pfam12347
    Location:16 → 68
    HJURP_C; Holliday junction regulator protein family C-terminal repeat
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.