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LOC101775308 pectinesterase [ Setaria italica (foxtail millet) ]

Gene ID: 101775308, updated on 21-Dec-2023

Summary

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Gene symbol
LOC101775308
Gene description
pectinesterase
Locus tag
SETIT_000786mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Setaria italica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Genomic context

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Location:
chromosome: V
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Setaria_italica_v2.0 (GCF_000263155.2) V NC_028454.1 (5206756..5211610)
101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675965.1 (5207239..5209381)

Chromosome V - NC_028454.1Genomic Context describing neighboring genes Neighboring gene putative ripening-related protein 6 Neighboring gene uncharacterized LOC101765425 Neighboring gene protein TPR1 Neighboring gene GTP-binding protein SAR1A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pectinesterase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectinesterase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Setaria_italica_v2.0 Primary Assembly

Genomic

  1. NC_028454.1 Reference Setaria_italica_v2.0 Primary Assembly

    Range
    5206756..5211610
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004971517.3 → XP_004971574.1  pectinesterase

    UniProtKB/TrEMBL
    K3XFW7
    Conserved Domains (1) summary
    cl27601
    Location:49 → 586
    Pectinesterase; Pectinesterase
Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases