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Taxonomy browser (Setaria italica)

Setaria italica

Taxonomy ID: 4555 (for references in articles please use NCBI:txid4555)
current name
Setaria italica (L.) P.Beauv.
homotypic synonym:
Chaetochloa italica (L.) Scribn.
Panicum italicum L.
Setaria viridis subsp. italica (L.) Briq.
Genbank common name: foxtail millet
NCBI BLAST name: monocots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
   Entrez records   
Database name Direct links
Nucleotide 209,582
Protein 80,169
Structure 2
Genome 1
Popset 96
GEO Datasets 24
PubMed Central 1,890
Gene 39,807
SRA Experiments 5,317
Identical Protein Groups 49,531
BioProject 304
BioSample 7,259
Assembly 3
PubChem BioAssay 6
Taxonomy 1

Comments and References:

Soreng RJ et al. 2003 & on
Soreng RJ, G Davidse, PM Peterson, FO Zuloaga, EJ Judziewicz, TS Filgueiras & O Morrone 2003 and onwards. On-line taxonomic novelties and updates, distributional additions and corrections, and editorial changes since the four published volumes of the Catalogue of New World Grasses (Poaceae) published in Contributions from the United States National Herbarium Vols. 39, 41, 46, and 48. Internet Catalogue of New World Grasses
Aliscioni SS et al. 2003, doi:10.3732/ajb.90.5.796
Aliscioni SS, Giussani LM, Zuloaga FO, and Kellogg EA. 2003. A molecular phylogeny of Panicum (Poaceae: Paniceae): tests of monophyly and phylogenetic placement within the Panicoideae. American Journal of Botany 90: 796-821. doi:

Genome Information

Go to NCBI genomic BLAST page for Setaria italica
Genome view: 10 chromosomes

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Setaria italica taxonomy taxonomy/phylogenetic Arctos Specimen Database
dryaddb supplemental materials Dryad Digital Repository
14 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
2614208509: Setaria italica Yugu1 organism-specific Integrated Microbial Genomes
Setaria italica (L.) Beauv. taxonomy/phylogenetic Integrated Taxonomic Information System
Setaria italica taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Setaria italica taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
Setaria italica taxonomy/phylogenetic Plants of the World Online
Setaria italica taxonomy/phylogenetic The International Plant Names Index
Setaria italica (L.) P. Beauv. taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
2 records from this provider organism-specific WebScipio - eukaryotic gene identification
6 records from this provider organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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